| TF name | Position | PWM scan score |
| ArcA | 279-339 | 23.359 |
| RcsB | 74-87 | 17.496 |
| GcvA | 107-135 | 16.968 |
| NagC | 320-342 | 14.849 |
| CysB | 8-49 | 14.811 |
| OmpR | 21-40 | 14.274 |
| Fis | 310-330 | 14.016 |
| GlpR | 363-382 | 13.992 |
| MetR | 99-122 | 13.928 |
| CRP | 23-44 | 13.573 |
| DnaA | 312-320 | 13.567 |
| GntR | 212-231 | 13.217 |
| GadE | 30-49 | 13.187 |
| SoxS | 315-332 | 12.946 |
| CytR | 261-300 | 12.745 |
| IHF | 35-47 | 12.514 |
| FNR | 161-182 | 12.224 |
| UlaR | 11-30 | 12.091 |
| Nac | 235-249 | 12.077 |
| H-NS | 361-375 | 11.979 |
| MetJ | 122-129 | 11.820 |
| FhlA | 285-324 | 11.766 |
| OxyR | 300-344 | 11.716 |
| TyrR | 205-226 | 11.711 |
| MelR | 273-290 | 11.652 |
| Mlc | 7-29 | 11.320 |
| Lrp | 17-28 | 11.212 |
| XylR | 281-298 | 10.759 |
| CpxR | 312-326 | 10.728 |
| DcuR | 33-87 | 10.688 |
| ArgP | 42-54 | 10.665 |
| PhoB | 101-120 | 10.448 |
| ArgR | 107-122 | 10.278 |
| Rob | 259-279 | 10.259 |
| UxuR | 307-324 | 9.823 |
| NarL | 319-325 | 9.580 |
| PhoP | 115-131 | 9.545 |
| MarA | 298-318 | 9.421 |
| AgaR | 361-384 | 9.368 |
| TorR | 367-376 | 8.796 |
| ModE | 166-192 | 8.599 |
| IdnR | 67-82 | 8.250 |
| DeoR | 203-218 | 8.199 |
| FadR | 123-139 | 8.104 |
| Ada | 270-297 | 8.074 |
| AraC | 167-184 | 7.936 |
| Fur | 166-180 | 7.847 |
| RhaS | 215-231 | 7.741 |
| LacI | 120-140 | 7.627 |
| PurR | 251-266 | 7.430 |
| PspF | 317-333 | 6.666 |
| NarP | 263-269 | 6.561 |
| NtrC | 314-330 | 6.379 |
| MalT | 353-362 | 6.194 |
| FruR | 288-305 | 5.477 |
| GalS | 330-345 | 5.327 |
| GalR | 330-345 | 5.327 |
| NorR | 232-248 | 5.229 |