| TF name | Position | PWM scan score |
| ArcA | 326-386 | 31.930 |
| CytR | 241-280 | 26.116 |
| GadE | 166-185 | 23.009 |
| CysB | 254-295 | 21.448 |
| OxyR | 272-316 | 20.232 |
| OmpR | 340-359 | 19.331 |
| DcuR | 284-338 | 18.897 |
| NagC | 265-287 | 18.877 |
| GcvA | 158-186 | 18.162 |
| PspF | 259-275 | 18.055 |
| H-NS | 261-275 | 17.942 |
| CRP | 352-373 | 17.864 |
| FNR | 156-177 | 16.559 |
| Mlc | 263-285 | 16.292 |
| UlaR | 151-170 | 16.253 |
| TyrR | 347-368 | 15.212 |
| ArgR | 336-351 | 15.177 |
| PhoB | 353-372 | 15.175 |
| SoxS | 346-363 | 15.084 |
| IHF | 255-267 | 14.872 |
| FhlA | 119-158 | 14.096 |
| PhoP | 172-188 | 14.007 |
| Nac | 222-236 | 13.315 |
| Fur | 185-199 | 13.141 |
| Fis | 223-243 | 12.885 |
| DeoR | 290-305 | 12.878 |
| RcsB | 188-201 | 12.853 |
| MarA | 36-56 | 12.793 |
| AgaR | 177-200 | 12.550 |
| ModE | 51-77 | 11.973 |
| Ada | 307-334 | 11.838 |
| ArgP | 166-178 | 11.751 |
| Lrp | 184-195 | 11.585 |
| CpxR | 58-72 | 11.439 |
| GlpR | 354-373 | 11.131 |
| GntR | 350-369 | 10.904 |
| XylR | 230-247 | 10.826 |
| NorR | 326-342 | 10.648 |
| MetR | 328-351 | 10.594 |
| Rob | 351-371 | 10.319 |
| AraC | 275-292 | 9.972 |
| IdnR | 335-350 | 9.838 |
| FadR | 174-190 | 9.741 |
| NarL | 319-325 | 9.729 |
| MelR | 231-248 | 9.493 |
| UxuR | 352-369 | 9.279 |
| LacI | 279-299 | 8.953 |
| NarP | 191-197 | 8.911 |
| LexA | 197-216 | 8.522 |
| DnaA | 1-9 | 8.517 |
| TorR | 363-372 | 8.159 |
| NtrC | 278-294 | 7.976 |
| CueR | 216-234 | 7.514 |
| MetJ | 128-135 | 7.485 |
| PurR | 257-272 | 7.468 |
| TrpR | 50-67 | 7.001 |
| GalR | 267-282 | 5.270 |
| GalS | 267-282 | 5.270 |
| MalT | 113-122 | 5.097 |