| TF name | Position | PWM scan score |
| ArcA | 292-352 | 26.727 |
| CysB | 43-84 | 23.296 |
| OmpR | 331-350 | 20.901 |
| DcuR | 272-326 | 20.619 |
| AgaR | 276-299 | 18.919 |
| IdnR | 324-339 | 18.064 |
| Nac | 282-296 | 17.542 |
| GadE | 289-308 | 17.511 |
| FNR | 280-301 | 15.529 |
| Fis | 324-344 | 15.364 |
| GcvA | 237-265 | 15.320 |
| NagC | 48-70 | 14.766 |
| PhoP | 280-296 | 14.489 |
| RcsB | 43-56 | 14.139 |
| CpxR | 252-266 | 13.885 |
| IHF | 286-298 | 13.796 |
| XylR | 71-88 | 13.674 |
| ArgR | 55-70 | 13.578 |
| OxyR | 310-354 | 13.442 |
| Mlc | 66-88 | 13.112 |
| H-NS | 329-343 | 13.084 |
| CRP | 277-298 | 12.904 |
| UxuR | 138-155 | 12.875 |
| Rob | 47-67 | 12.779 |
| ModE | 133-159 | 12.587 |
| CytR | 272-311 | 12.418 |
| SoxS | 280-297 | 12.130 |
| UlaR | 281-300 | 12.065 |
| ArgP | 342-354 | 11.860 |
| MetJ | 134-141 | 11.615 |
| GalS | 339-354 | 11.261 |
| GalR | 339-354 | 11.261 |
| Lrp | 283-294 | 11.086 |
| DnaA | 288-296 | 10.846 |
| NtrC | 155-171 | 10.292 |
| MelR | 275-292 | 10.066 |
| AraC | 61-78 | 9.733 |
| PspF | 61-77 | 9.443 |
| MetR | 267-290 | 9.384 |
| PhoB | 275-294 | 9.359 |
| Ada | 311-338 | 9.293 |
| FruR | 142-159 | 9.257 |
| LacI | 1-21 | 8.906 |
| GlpR | 97-116 | 8.795 |
| NarL | 337-343 | 8.792 |
| Fur | 64-78 | 8.465 |
| MarA | 111-131 | 8.451 |
| FhlA | 218-257 | 8.359 |
| TorR | 97-106 | 8.327 |
| TyrR | 284-305 | 7.987 |
| NarP | 145-151 | 7.806 |
| DeoR | 290-305 | 7.610 |
| MalT | 34-43 | 7.230 |
| GntR | 261-280 | 6.928 |
| NorR | 383-399 | 6.827 |
| PurR | 112-127 | 6.587 |
| FadR | 140-156 | 6.155 |
| CueR | 249-267 | 6.077 |
| RhaS | 163-179 | 5.292 |