| TF name | Position | PWM scan score |
| ArcA | 189-249 | 26.890 |
| CysB | 26-67 | 23.904 |
| NagC | 36-58 | 20.787 |
| AgaR | 18-41 | 18.676 |
| FNR | 33-54 | 18.104 |
| LexA | 315-334 | 17.611 |
| OxyR | 194-238 | 17.486 |
| Fis | 79-99 | 17.225 |
| OmpR | 211-230 | 16.887 |
| UlaR | 301-320 | 16.820 |
| CytR | 24-63 | 16.487 |
| CpxR | 311-325 | 16.300 |
| Fur | 299-313 | 15.291 |
| GadE | 216-235 | 15.115 |
| DcuR | 57-111 | 14.942 |
| Nac | 212-226 | 14.072 |
| ArgR | 67-82 | 13.899 |
| CRP | 208-229 | 13.807 |
| H-NS | 351-365 | 13.583 |
| Rob | 220-240 | 13.532 |
| GntR | 1-20 | 13.408 |
| PhoP | 211-227 | 13.198 |
| PhoB | 222-241 | 13.014 |
| TyrR | 292-313 | 12.965 |
| SoxS | 289-306 | 12.774 |
| ModE | 79-105 | 12.764 |
| AraC | 343-360 | 12.566 |
| ArgP | 74-86 | 12.483 |
| IHF | 201-213 | 12.152 |
| Lrp | 282-293 | 11.749 |
| DeoR | 288-303 | 11.710 |
| RcsB | 208-221 | 11.204 |
| MarA | 209-229 | 11.157 |
| Mlc | 285-307 | 11.009 |
| GcvA | 307-335 | 10.919 |
| IdnR | 66-81 | 10.909 |
| PspF | 198-214 | 10.890 |
| GlpR | 214-233 | 10.782 |
| XylR | 85-102 | 9.781 |
| Ada | 16-43 | 9.508 |
| NarL | 176-182 | 9.482 |
| MelR | 274-291 | 9.411 |
| MetR | 92-115 | 9.248 |
| NorR | 33-49 | 9.137 |
| TorR | 377-386 | 9.030 |
| DnaA | 41-49 | 8.703 |
| UxuR | 202-219 | 7.943 |
| LacI | 350-370 | 6.905 |
| NarP | 79-85 | 6.794 |
| FhlA | 35-74 | 6.473 |
| GalR | 329-344 | 6.381 |
| GalS | 329-344 | 6.381 |
| FadR | 373-389 | 5.804 |
| RhaS | 40-56 | 5.521 |
| FruR | 359-376 | 5.352 |
| MalT | 33-42 | 5.303 |
| MetJ | 71-78 | 5.291 |