| TF name | Position | PWM scan score |
| ArcA | 313-373 | 21.028 |
| Ada | 305-332 | 19.926 |
| AgaR | 54-77 | 18.511 |
| PhoP | 345-361 | 16.119 |
| FNR | 56-77 | 14.659 |
| Fis | 35-55 | 13.295 |
| RcsB | 3-16 | 13.243 |
| CysB | 9-50 | 13.142 |
| ArgP | 250-262 | 13.088 |
| SoxS | 146-163 | 12.918 |
| PspF | 330-346 | 12.871 |
| AraC | 56-73 | 12.726 |
| XylR | 274-291 | 12.343 |
| GadE | 318-337 | 12.155 |
| IHF | 133-145 | 12.076 |
| Fur | 56-70 | 12.056 |
| CytR | 5-44 | 11.927 |
| OmpR | 147-166 | 11.644 |
| CRP | 53-74 | 11.626 |
| Nac | 235-249 | 11.425 |
| Lrp | 5-16 | 11.206 |
| NagC | 42-64 | 10.667 |
| H-NS | 150-164 | 10.562 |
| MetR | 256-279 | 10.481 |
| UlaR | 266-285 | 10.403 |
| TyrR | 340-361 | 10.268 |
| Rob | 133-153 | 10.263 |
| LexA | 352-371 | 10.217 |
| NarL | 352-358 | 10.130 |
| PhoB | 133-152 | 9.979 |
| FhlA | 229-268 | 9.902 |
| MarA | 332-352 | 9.876 |
| IdnR | 313-328 | 9.875 |
| CpxR | 154-168 | 9.734 |
| NorR | 13-29 | 9.681 |
| DeoR | 318-333 | 9.565 |
| MelR | 260-277 | 9.536 |
| NarP | 258-264 | 9.455 |
| ArgR | 322-337 | 8.547 |
| OxyR | 129-173 | 8.231 |
| DnaA | 154-162 | 8.160 |
| GntR | 249-268 | 7.760 |
| FruR | 52-69 | 7.112 |
| GlpR | 359-378 | 7.093 |
| RhaS | 204-220 | 6.772 |
| GcvA | 149-177 | 6.587 |
| Mlc | 4-26 | 6.498 |
| DcuR | 261-315 | 6.152 |
| UxuR | 340-357 | 6.093 |
| MalT | 88-97 | 6.011 |
| ModE | 201-227 | 5.812 |
| MetJ | 114-121 | 5.779 |
| TorR | 246-255 | 5.641 |
| LacI | 29-49 | 5.045 |