| TF name | Position | PWM scan score |
| ArcA | 295-355 | 30.895 |
| MetR | 338-361 | 25.730 |
| OmpR | 64-83 | 22.293 |
| CysB | 49-90 | 20.783 |
| Mlc | 363-385 | 16.834 |
| GadE | 206-225 | 16.692 |
| GntR | 64-83 | 16.070 |
| GlpR | 215-234 | 15.868 |
| H-NS | 78-92 | 15.846 |
| FNR | 63-84 | 15.669 |
| AgaR | 346-369 | 15.365 |
| ArgR | 384-399 | 15.030 |
| NagC | 66-88 | 14.993 |
| IHF | 72-84 | 14.830 |
| TyrR | 354-375 | 14.569 |
| PhoB | 378-397 | 14.496 |
| Nac | 203-217 | 14.450 |
| CytR | 270-309 | 14.064 |
| ModE | 266-292 | 13.983 |
| CRP | 252-273 | 13.475 |
| OxyR | 260-304 | 13.371 |
| DcuR | 342-396 | 11.991 |
| Fis | 59-79 | 11.799 |
| UlaR | 240-259 | 11.770 |
| PhoP | 381-397 | 11.659 |
| ArgP | 386-398 | 11.600 |
| DnaA | 254-262 | 11.578 |
| Rob | 246-266 | 11.285 |
| TorR | 210-219 | 11.212 |
| FadR | 214-230 | 11.193 |
| NtrC | 144-160 | 11.155 |
| Lrp | 64-75 | 11.149 |
| GcvA | 62-90 | 11.144 |
| DeoR | 43-58 | 11.070 |
| PspF | 54-70 | 11.061 |
| SoxS | 145-162 | 11.046 |
| AraC | 73-90 | 10.657 |
| NarL | 83-89 | 10.130 |
| RcsB | 247-260 | 10.048 |
| MarA | 333-353 | 9.805 |
| MetJ | 52-59 | 9.666 |
| XylR | 62-79 | 9.509 |
| IdnR | 383-398 | 8.233 |
| CpxR | 366-380 | 8.108 |
| FruR | 36-53 | 7.734 |
| LexA | 248-267 | 7.677 |
| PurR | 269-284 | 7.663 |
| Fur | 72-86 | 7.579 |
| NarP | 319-325 | 7.550 |
| LacI | 273-293 | 7.466 |
| RhaS | 49-65 | 7.431 |
| UxuR | 55-72 | 7.426 |
| MelR | 190-207 | 6.841 |
| Ada | 259-286 | 6.691 |
| NorR | 352-368 | 6.535 |