| TF name | Position | PWM scan score |
| ArcA | 249-309 | 35.107 |
| CysB | 269-310 | 25.257 |
| CytR | 202-241 | 18.375 |
| OxyR | 232-276 | 18.143 |
| OmpR | 377-396 | 16.984 |
| FNR | 291-312 | 16.172 |
| MarA | 260-280 | 15.769 |
| AgaR | 328-351 | 15.713 |
| Rob | 274-294 | 15.025 |
| UlaR | 268-287 | 14.979 |
| MetR | 159-182 | 14.956 |
| DeoR | 164-179 | 14.739 |
| NagC | 170-192 | 14.721 |
| PhoP | 266-282 | 14.499 |
| ArgP | 267-279 | 14.437 |
| DcuR | 253-307 | 14.361 |
| GcvA | 205-233 | 14.058 |
| CRP | 333-354 | 13.785 |
| IHF | 209-221 | 13.780 |
| Ada | 166-193 | 13.772 |
| Mlc | 305-327 | 13.716 |
| Nac | 264-278 | 13.673 |
| TorR | 344-353 | 13.163 |
| Fur | 214-228 | 12.971 |
| SoxS | 348-365 | 12.905 |
| PurR | 330-345 | 12.717 |
| TyrR | 167-188 | 12.534 |
| GadE | 179-198 | 12.428 |
| H-NS | 249-263 | 12.320 |
| Fis | 262-282 | 12.254 |
| PhoB | 124-143 | 11.325 |
| Lrp | 265-276 | 11.318 |
| CpxR | 181-195 | 11.313 |
| TrpR | 267-284 | 11.076 |
| FhlA | 220-259 | 10.985 |
| RcsB | 334-347 | 10.926 |
| ModE | 371-397 | 10.887 |
| ArgR | 207-222 | 10.839 |
| XylR | 207-224 | 10.733 |
| GlpR | 299-318 | 10.477 |
| LacI | 335-355 | 10.226 |
| DnaA | 225-233 | 9.060 |
| GalS | 210-225 | 9.035 |
| GalR | 210-225 | 9.035 |
| IdnR | 181-196 | 8.955 |
| AraC | 180-197 | 8.773 |
| MelR | 326-343 | 8.597 |
| NarP | 112-118 | 8.594 |
| UxuR | 60-77 | 8.403 |
| NarL | 267-273 | 7.927 |
| GntR | 377-396 | 7.313 |
| LexA | 317-336 | 7.260 |
| NorR | 301-317 | 6.918 |
| PspF | 379-395 | 6.757 |
| FruR | 144-161 | 6.557 |
| FadR | 239-255 | 6.172 |
| MetJ | 180-187 | 5.992 |
| RhaS | 92-108 | 5.535 |