| TF name | Position | PWM scan score |
| ArcA | 203-263 | 33.624 |
| CytR | 170-209 | 23.606 |
| CRP | 203-224 | 18.538 |
| DcuR | 233-287 | 17.507 |
| CysB | 235-276 | 17.062 |
| GadE | 202-221 | 16.920 |
| SoxS | 306-323 | 16.434 |
| GcvA | 197-225 | 16.004 |
| PhoB | 204-223 | 15.538 |
| OmpR | 371-390 | 15.492 |
| NagC | 372-394 | 15.422 |
| GlpR | 378-397 | 15.317 |
| OxyR | 208-252 | 15.226 |
| H-NS | 203-217 | 15.213 |
| AgaR | 162-185 | 15.095 |
| AraC | 223-240 | 15.062 |
| FNR | 206-227 | 14.907 |
| ArgR | 239-254 | 14.299 |
| Mlc | 105-127 | 14.087 |
| TyrR | 369-390 | 14.005 |
| NorR | 125-141 | 13.878 |
| Fis | 231-251 | 13.872 |
| FruR | 308-325 | 13.433 |
| DeoR | 132-147 | 13.228 |
| DnaA | 221-229 | 12.771 |
| IHF | 96-108 | 12.654 |
| UlaR | 71-90 | 12.382 |
| Nac | 61-75 | 11.853 |
| MarA | 101-121 | 11.795 |
| MelR | 339-356 | 11.629 |
| CpxR | 124-138 | 11.449 |
| TorR | 5-14 | 11.417 |
| Lrp | 344-355 | 11.295 |
| ArgP | 118-130 | 11.123 |
| PhoP | 94-110 | 10.693 |
| Ada | 135-162 | 10.652 |
| Fur | 120-134 | 10.633 |
| XylR | 177-194 | 10.482 |
| CaiF | 179-223 | 10.444 |
| PspF | 347-363 | 10.148 |
| PurR | 178-193 | 10.019 |
| Rob | 99-119 | 9.989 |
| RcsB | 342-355 | 9.561 |
| ModE | 115-141 | 9.495 |
| NarL | 202-208 | 9.240 |
| FadR | 357-373 | 8.914 |
| FhlA | 229-268 | 8.475 |
| MetR | 63-86 | 8.157 |
| GalR | 226-241 | 7.881 |
| GalS | 226-241 | 7.881 |
| NarP | 27-33 | 7.400 |
| UxuR | 304-321 | 7.164 |
| GntR | 100-119 | 6.891 |
| MetJ | 223-230 | 6.624 |
| MalT | 40-49 | 6.396 |
| LexA | 365-384 | 5.823 |
| NtrC | 12-28 | 5.730 |
| LacI | 187-207 | 5.112 |
| IdnR | 3-18 | 5.030 |