| TF name | Position | PWM scan score |
| CysB | 240-281 | 23.423 |
| ArcA | 6-66 | 22.856 |
| Ada | 62-89 | 17.828 |
| PhoB | 165-184 | 16.858 |
| CytR | 41-80 | 16.671 |
| UlaR | 71-90 | 16.658 |
| FhlA | 47-86 | 15.388 |
| NagC | 352-374 | 14.585 |
| MetR | 165-188 | 14.325 |
| Fur | 258-272 | 14.168 |
| AgaR | 365-388 | 14.135 |
| Mlc | 135-157 | 13.302 |
| FNR | 324-345 | 13.221 |
| IHF | 373-385 | 13.169 |
| Lrp | 367-378 | 12.701 |
| TyrR | 168-189 | 12.073 |
| Nac | 42-56 | 11.915 |
| RcsB | 28-41 | 11.832 |
| GcvA | 362-390 | 11.813 |
| OmpR | 366-385 | 11.624 |
| UxuR | 366-383 | 11.512 |
| OxyR | 338-382 | 11.315 |
| Fis | 285-305 | 11.198 |
| FruR | 177-194 | 10.925 |
| GlpR | 176-195 | 10.876 |
| ArgP | 193-205 | 10.662 |
| GadE | 352-371 | 10.486 |
| FadR | 331-347 | 10.485 |
| AraC | 258-275 | 10.475 |
| ArgR | 320-335 | 10.352 |
| ModE | 285-311 | 10.286 |
| PurR | 170-185 | 10.176 |
| DcuR | 303-357 | 10.150 |
| H-NS | 365-379 | 10.140 |
| CpxR | 372-386 | 10.121 |
| DnaA | 372-380 | 10.111 |
| CRP | 321-342 | 9.836 |
| NarP | 62-68 | 9.455 |
| NarL | 259-265 | 9.129 |
| MalT | 159-168 | 9.118 |
| PhoP | 69-85 | 9.018 |
| Rob | 280-300 | 8.893 |
| LexA | 351-370 | 8.667 |
| TorR | 364-373 | 8.594 |
| XylR | 278-295 | 8.360 |
| DeoR | 221-236 | 8.341 |
| NorR | 61-77 | 8.254 |
| IdnR | 360-375 | 8.240 |
| GntR | 291-310 | 8.112 |
| PspF | 281-297 | 8.100 |
| MetJ | 195-202 | 7.327 |
| LacI | 378-398 | 7.197 |
| SoxS | 368-385 | 6.775 |
| MarA | 294-314 | 6.157 |
| MelR | 149-166 | 5.381 |
| NtrC | 19-35 | 5.231 |