| TF name | Position | PWM scan score |
| ArcA | 314-374 | 24.789 |
| TyrR | 354-375 | 18.466 |
| OmpR | 258-277 | 18.366 |
| H-NS | 144-158 | 17.053 |
| DeoR | 150-165 | 16.745 |
| LacI | 199-219 | 15.477 |
| AgaR | 186-209 | 15.374 |
| NorR | 38-54 | 15.305 |
| CysB | 191-232 | 15.301 |
| CRP | 198-219 | 15.274 |
| Ada | 183-210 | 15.145 |
| CytR | 131-170 | 14.396 |
| PhoP | 313-329 | 14.090 |
| FNR | 314-335 | 13.852 |
| GcvA | 276-304 | 13.662 |
| IHF | 337-349 | 13.656 |
| DcuR | 332-386 | 13.646 |
| OxyR | 154-198 | 13.281 |
| CpxR | 210-224 | 13.090 |
| Fis | 41-61 | 12.788 |
| MarA | 85-105 | 12.628 |
| PhoB | 87-106 | 12.593 |
| UlaR | 359-378 | 12.536 |
| GadE | 271-290 | 12.388 |
| GlpR | 363-382 | 12.343 |
| ModE | 198-224 | 12.188 |
| XylR | 57-74 | 11.871 |
| AraC | 187-204 | 11.342 |
| FruR | 329-346 | 11.138 |
| MetR | 359-382 | 10.865 |
| UxuR | 342-359 | 10.790 |
| Mlc | 250-272 | 10.754 |
| Lrp | 192-203 | 10.658 |
| Nac | 37-51 | 10.610 |
| PspF | 215-231 | 10.514 |
| Rob | 267-287 | 10.326 |
| NarL | 226-232 | 10.241 |
| RcsB | 213-226 | 10.103 |
| SoxS | 274-291 | 10.087 |
| ArgP | 313-325 | 9.860 |
| ArgR | 275-290 | 9.767 |
| IdnR | 383-398 | 8.797 |
| PurR | 140-155 | 8.701 |
| DnaA | 357-365 | 8.304 |
| NtrC | 327-343 | 8.281 |
| NagC | 252-274 | 8.140 |
| GalR | 304-319 | 8.099 |
| GalS | 304-319 | 8.099 |
| FadR | 279-295 | 7.949 |
| TorR | 311-320 | 7.699 |
| Fur | 198-212 | 7.483 |
| NarP | 20-26 | 6.657 |
| MelR | 58-75 | 6.428 |
| MalT | 345-354 | 6.025 |
| MetJ | 195-202 | 5.992 |
| FhlA | 187-226 | 5.511 |
| GntR | 210-229 | 5.093 |