| TF name | Position | PWM scan score |
| ArcA | 240-300 | 30.881 |
| NagC | 265-287 | 23.171 |
| FNR | 166-187 | 18.660 |
| Rob | 270-290 | 18.086 |
| CysB | 262-303 | 17.417 |
| CytR | 205-244 | 17.328 |
| OmpR | 264-283 | 17.083 |
| CRP | 267-288 | 16.488 |
| UlaR | 102-121 | 16.224 |
| Fur | 273-287 | 15.344 |
| H-NS | 281-295 | 15.055 |
| GadE | 99-118 | 14.911 |
| AgaR | 44-67 | 14.692 |
| ModE | 273-299 | 13.781 |
| PspF | 253-269 | 13.727 |
| PhoB | 191-210 | 13.403 |
| PhoP | 229-245 | 13.395 |
| DcuR | 247-301 | 13.270 |
| Mlc | 108-130 | 13.118 |
| GcvA | 280-308 | 13.065 |
| Nac | 268-282 | 12.784 |
| MetR | 268-291 | 12.432 |
| TyrR | 257-278 | 12.121 |
| ArgP | 268-280 | 12.092 |
| ArgR | 271-286 | 11.940 |
| Fis | 379-399 | 11.938 |
| IHF | 279-291 | 11.540 |
| Lrp | 264-275 | 11.360 |
| MarA | 203-223 | 10.736 |
| NorR | 255-271 | 10.648 |
| GlpR | 165-184 | 10.614 |
| SoxS | 277-294 | 10.402 |
| NarL | 285-291 | 10.241 |
| OxyR | 244-288 | 10.127 |
| RcsB | 215-228 | 10.123 |
| FhlA | 262-301 | 9.865 |
| AraC | 352-369 | 9.382 |
| IdnR | 24-39 | 9.304 |
| XylR | 238-255 | 9.208 |
| TorR | 266-275 | 8.902 |
| LacI | 219-239 | 8.802 |
| CpxR | 29-43 | 8.576 |
| GntR | 262-281 | 8.403 |
| DnaA | 5-13 | 8.238 |
| FruR | 375-392 | 8.097 |
| GalR | 373-388 | 7.916 |
| GalS | 373-388 | 7.916 |
| MalT | 166-175 | 7.902 |
| NarP | 208-214 | 7.762 |
| MelR | 12-29 | 6.805 |
| MetJ | 37-44 | 6.661 |
| UxuR | 47-64 | 6.526 |
| NtrC | 345-361 | 6.409 |
| DeoR | 271-286 | 6.399 |
| Ada | 356-383 | 6.160 |
| PurR | 13-28 | 5.658 |