| TF name | Position | PWM scan score |
| ArcA | 335-395 | 34.769 |
| CytR | 339-378 | 25.517 |
| OxyR | 286-330 | 21.692 |
| AgaR | 367-390 | 19.963 |
| CysB | 309-350 | 19.426 |
| UlaR | 373-392 | 18.864 |
| Fis | 143-163 | 18.090 |
| Fur | 51-65 | 18.089 |
| NagC | 140-162 | 18.084 |
| Mlc | 58-80 | 17.735 |
| OmpR | 302-321 | 17.307 |
| GcvA | 297-325 | 16.999 |
| MetR | 141-164 | 16.788 |
| Nac | 142-156 | 16.486 |
| PhoB | 357-376 | 16.478 |
| H-NS | 303-317 | 16.192 |
| GadE | 357-376 | 15.686 |
| GntR | 135-154 | 15.680 |
| CRP | 339-360 | 15.105 |
| ArgR | 373-388 | 15.096 |
| TyrR | 309-330 | 14.998 |
| IHF | 377-389 | 14.164 |
| Ada | 354-381 | 13.960 |
| PhoP | 147-163 | 13.032 |
| FNR | 342-363 | 12.962 |
| ModE | 342-368 | 12.632 |
| AraC | 282-299 | 12.622 |
| RcsB | 378-391 | 12.360 |
| XylR | 319-336 | 12.340 |
| ArgP | 340-352 | 12.295 |
| Rob | 342-362 | 11.960 |
| SoxS | 350-367 | 11.341 |
| NtrC | 87-103 | 11.103 |
| CpxR | 343-357 | 11.084 |
| Lrp | 285-296 | 10.884 |
| DeoR | 203-218 | 10.613 |
| NorR | 344-360 | 10.148 |
| UxuR | 370-387 | 10.028 |
| GlpR | 58-77 | 9.969 |
| TorR | 60-69 | 9.754 |
| IdnR | 163-178 | 9.586 |
| DnaA | 344-352 | 9.357 |
| NarL | 260-266 | 8.932 |
| MelR | 252-269 | 8.816 |
| DcuR | 332-386 | 8.815 |
| FhlA | 133-172 | 8.609 |
| MetJ | 255-262 | 8.331 |
| CaiF | 290-334 | 8.265 |
| MarA | 349-369 | 8.224 |
| FadR | 228-244 | 7.567 |
| LacI | 100-120 | 7.291 |
| RhaS | 309-325 | 6.855 |
| PspF | 374-390 | 6.757 |
| LexA | 102-121 | 6.068 |
| MalT | 6-15 | 6.014 |
| FruR | 212-229 | 5.683 |
| GalR | 47-62 | 5.622 |
| GalS | 47-62 | 5.622 |
| NarP | 93-99 | 5.283 |