| TF name | Position | PWM scan score |
| ArcA | 222-282 | 26.296 |
| CysB | 256-297 | 23.575 |
| OxyR | 253-297 | 19.486 |
| UlaR | 252-271 | 16.381 |
| Nac | 259-273 | 16.226 |
| OmpR | 159-178 | 16.002 |
| NagC | 104-126 | 15.960 |
| DcuR | 249-303 | 15.096 |
| TyrR | 270-291 | 14.898 |
| GadE | 151-170 | 14.579 |
| IHF | 156-168 | 14.189 |
| MarA | 42-62 | 13.724 |
| Fis | 137-157 | 13.696 |
| FNR | 360-381 | 13.671 |
| AgaR | 259-282 | 13.324 |
| PspF | 92-108 | 13.183 |
| Rob | 117-137 | 12.985 |
| CytR | 265-304 | 12.778 |
| H-NS | 295-309 | 12.367 |
| MetR | 234-257 | 12.152 |
| ModE | 246-272 | 12.098 |
| PhoB | 184-203 | 11.842 |
| ArgR | 259-274 | 11.316 |
| DeoR | 54-69 | 11.225 |
| Lrp | 47-58 | 11.027 |
| XylR | 94-111 | 10.924 |
| SoxS | 247-264 | 10.867 |
| GalS | 157-172 | 10.838 |
| GalR | 157-172 | 10.838 |
| DnaA | 265-273 | 10.218 |
| RcsB | 45-58 | 10.174 |
| TorR | 329-338 | 9.980 |
| ArgP | 262-274 | 9.970 |
| FadR | 294-310 | 9.704 |
| GcvA | 218-246 | 9.558 |
| CRP | 95-116 | 9.416 |
| CpxR | 255-269 | 9.378 |
| GlpR | 103-122 | 9.257 |
| Mlc | 52-74 | 9.157 |
| AraC | 267-284 | 9.065 |
| IdnR | 352-367 | 9.059 |
| PhoP | 257-273 | 8.687 |
| GntR | 98-117 | 8.677 |
| NorR | 97-113 | 8.593 |
| LacI | 261-281 | 8.161 |
| NarL | 392-398 | 7.839 |
| NarP | 225-231 | 7.806 |
| UxuR | 133-150 | 7.768 |
| MelR | 42-59 | 7.594 |
| LexA | 189-208 | 7.541 |
| Ada | 357-384 | 7.376 |
| Fur | 290-304 | 6.913 |
| MetJ | 267-274 | 6.375 |
| FruR | 263-280 | 6.332 |
| RhaS | 96-112 | 6.024 |