| TF name | Position | PWM scan score |
| Mlc | 126-148 | 30.613 |
| ArcA | 108-168 | 28.052 |
| CysB | 341-382 | 27.059 |
| OxyR | 110-154 | 20.940 |
| CRP | 127-148 | 17.928 |
| Ada | 358-385 | 17.848 |
| FNR | 375-396 | 16.218 |
| AraC | 103-120 | 16.186 |
| OmpR | 323-342 | 15.484 |
| IHF | 43-55 | 14.936 |
| ModE | 121-147 | 14.641 |
| GadE | 254-273 | 14.184 |
| PhoB | 195-214 | 14.073 |
| GcvA | 43-71 | 13.998 |
| Rob | 273-293 | 13.976 |
| Nac | 132-146 | 13.903 |
| CpxR | 373-387 | 13.568 |
| H-NS | 141-155 | 13.506 |
| FhlA | 74-113 | 13.327 |
| NagC | 127-149 | 12.826 |
| Fis | 133-153 | 12.637 |
| RcsB | 205-218 | 12.592 |
| MarA | 266-286 | 12.401 |
| CytR | 252-291 | 12.313 |
| Lrp | 108-119 | 12.198 |
| XylR | 370-387 | 12.068 |
| DnaA | 113-121 | 11.932 |
| ArgR | 367-382 | 11.867 |
| MetJ | 55-62 | 11.820 |
| UxuR | 178-195 | 11.334 |
| GlpR | 278-297 | 11.232 |
| DeoR | 254-269 | 11.106 |
| AgaR | 358-381 | 10.792 |
| MelR | 166-183 | 10.773 |
| NorR | 252-268 | 10.762 |
| DcuR | 4-58 | 10.621 |
| ArgP | 377-389 | 10.433 |
| GntR | 19-38 | 10.419 |
| TyrR | 369-390 | 10.361 |
| FadR | 286-302 | 9.789 |
| UlaR | 117-136 | 9.604 |
| NarL | 373-379 | 9.580 |
| PspF | 359-375 | 9.369 |
| IdnR | 161-176 | 9.331 |
| PhoP | 283-299 | 9.170 |
| SoxS | 366-383 | 8.955 |
| TorR | 21-30 | 8.709 |
| MetR | 217-240 | 8.602 |
| Fur | 267-281 | 8.547 |
| LacI | 327-347 | 7.825 |
| FruR | 294-311 | 7.515 |
| MalT | 341-350 | 6.824 |
| GalR | 168-183 | 6.809 |
| GalS | 168-183 | 6.809 |
| RhaS | 103-119 | 6.745 |
| CueR | 158-176 | 5.711 |
| NarP | 235-241 | 5.610 |
| PurR | 222-237 | 5.191 |