| TF name | Position | PWM scan score |
| ArcA | 71-131 | 30.097 |
| CysB | 70-111 | 26.951 |
| GcvA | 338-366 | 22.456 |
| Mlc | 80-102 | 22.013 |
| CRP | 69-90 | 20.780 |
| PhoB | 354-373 | 20.604 |
| OmpR | 97-116 | 19.403 |
| CytR | 340-379 | 18.287 |
| H-NS | 97-111 | 18.282 |
| AraC | 9-26 | 17.460 |
| Rob | 162-182 | 16.878 |
| FNR | 347-368 | 16.177 |
| OxyR | 141-185 | 15.933 |
| TyrR | 273-294 | 15.321 |
| NagC | 326-348 | 14.595 |
| GlpR | 275-294 | 14.567 |
| UxuR | 168-185 | 14.480 |
| Fur | 89-103 | 14.476 |
| GadE | 97-116 | 14.437 |
| CpxR | 372-386 | 13.711 |
| IHF | 336-348 | 13.603 |
| ArgP | 82-94 | 13.415 |
| ModE | 195-221 | 12.905 |
| PhoP | 351-367 | 12.898 |
| GntR | 81-100 | 12.182 |
| RcsB | 73-86 | 12.164 |
| PspF | 194-210 | 12.055 |
| CaiF | 62-106 | 11.834 |
| XylR | 133-150 | 11.770 |
| Fis | 88-108 | 11.685 |
| MarA | 18-38 | 11.308 |
| Lrp | 83-94 | 11.289 |
| Nac | 97-111 | 11.249 |
| AgaR | 68-91 | 10.875 |
| FadR | 373-389 | 10.577 |
| DnaA | 7-15 | 10.501 |
| NorR | 263-279 | 10.470 |
| SoxS | 330-347 | 10.410 |
| Ada | 147-174 | 10.404 |
| ArgR | 94-109 | 10.098 |
| UlaR | 98-117 | 9.943 |
| DeoR | 312-327 | 9.825 |
| GalS | 13-28 | 9.762 |
| GalR | 13-28 | 9.762 |
| NarL | 100-106 | 9.580 |
| DcuR | 149-203 | 9.217 |
| MelR | 203-220 | 8.991 |
| LacI | 324-344 | 8.500 |
| MetR | 6-29 | 8.266 |
| IdnR | 359-374 | 8.149 |
| TorR | 282-291 | 7.857 |
| MetJ | 192-199 | 7.798 |
| LexA | 366-385 | 7.473 |
| FhlA | 327-366 | 5.893 |
| MalT | 212-221 | 5.829 |
| FruR | 160-177 | 5.788 |
| TrpR | 166-183 | 5.690 |