| TF name | Position | PWM scan score |
| ArcA | 332-392 | 31.328 |
| CysB | 277-318 | 22.617 |
| GcvA | 52-80 | 22.305 |
| OmpR | 57-76 | 20.571 |
| GadE | 312-331 | 17.268 |
| CRP | 307-328 | 16.951 |
| TyrR | 113-134 | 16.575 |
| PhoB | 58-77 | 15.871 |
| FNR | 165-186 | 15.657 |
| AgaR | 162-185 | 15.282 |
| ModE | 47-73 | 15.094 |
| PhoP | 278-294 | 15.075 |
| NorR | 64-80 | 15.053 |
| Fis | 51-71 | 15.017 |
| DcuR | 48-102 | 15.009 |
| H-NS | 60-74 | 14.888 |
| AraC | 86-103 | 14.231 |
| PspF | 58-74 | 13.848 |
| MetR | 357-380 | 13.618 |
| NagC | 173-195 | 13.428 |
| OxyR | 232-276 | 13.405 |
| RcsB | 381-394 | 13.372 |
| GlpR | 351-370 | 13.244 |
| Rob | 56-76 | 12.566 |
| UlaR | 362-381 | 12.548 |
| Nac | 174-188 | 12.522 |
| ArgP | 357-369 | 12.483 |
| IHF | 62-74 | 12.214 |
| Lrp | 287-298 | 11.995 |
| SoxS | 291-308 | 11.713 |
| CytR | 212-251 | 11.503 |
| CpxR | 55-69 | 11.245 |
| MarA | 354-374 | 11.129 |
| XylR | 303-320 | 10.997 |
| DeoR | 125-140 | 10.957 |
| ArgR | 54-69 | 10.836 |
| FadR | 90-106 | 10.771 |
| MelR | 367-384 | 9.807 |
| NarP | 74-80 | 9.455 |
| DnaA | 3-11 | 9.246 |
| Mlc | 275-297 | 9.222 |
| TrpR | 248-265 | 9.173 |
| FruR | 54-71 | 9.039 |
| Fur | 366-380 | 8.843 |
| Ada | 276-303 | 8.598 |
| UxuR | 293-310 | 8.487 |
| GalS | 309-324 | 8.444 |
| GalR | 309-324 | 8.444 |
| NarL | 177-183 | 8.280 |
| TorR | 112-121 | 8.093 |
| MetJ | 47-54 | 7.871 |
| GntR | 288-307 | 7.869 |
| IdnR | 294-309 | 7.115 |
| MalT | 342-351 | 6.670 |
| NtrC | 366-382 | 6.364 |
| LacI | 61-81 | 5.398 |
| LexA | 165-184 | 5.292 |
| CueR | 144-162 | 5.100 |