| TF name | Position | PWM scan score |
| ArcA | 140-200 | 25.178 |
| CytR | 125-164 | 23.080 |
| Mlc | 365-387 | 21.416 |
| CysB | 151-192 | 19.554 |
| XylR | 274-291 | 18.731 |
| OmpR | 147-166 | 18.168 |
| IdnR | 158-173 | 17.013 |
| PhoP | 383-399 | 16.294 |
| OxyR | 142-186 | 16.243 |
| PhoB | 164-183 | 16.132 |
| UlaR | 54-73 | 16.080 |
| FNR | 134-155 | 15.844 |
| GntR | 217-236 | 15.809 |
| Ada | 202-229 | 15.437 |
| GadE | 79-98 | 14.391 |
| Fur | 172-186 | 14.374 |
| FruR | 274-291 | 13.598 |
| NagC | 163-185 | 13.188 |
| GcvA | 38-66 | 13.111 |
| IHF | 358-370 | 12.915 |
| DcuR | 117-171 | 12.286 |
| Fis | 298-318 | 12.216 |
| Rob | 276-296 | 12.204 |
| RcsB | 219-232 | 12.157 |
| CRP | 240-261 | 12.035 |
| MelR | 105-122 | 12.004 |
| MetR | 223-246 | 11.879 |
| SoxS | 172-189 | 11.833 |
| MetJ | 336-343 | 11.820 |
| LexA | 377-396 | 11.780 |
| Nac | 244-258 | 11.736 |
| ArgR | 351-366 | 11.669 |
| UxuR | 127-144 | 11.250 |
| Lrp | 180-191 | 11.195 |
| AgaR | 142-165 | 11.162 |
| H-NS | 278-292 | 11.123 |
| RhaS | 246-262 | 10.861 |
| GlpR | 357-376 | 10.195 |
| CpxR | 214-228 | 10.149 |
| PspF | 331-347 | 9.970 |
| ArgP | 304-316 | 9.357 |
| MarA | 352-372 | 9.349 |
| FadR | 276-292 | 9.329 |
| TyrR | 47-68 | 9.246 |
| NorR | 50-66 | 9.043 |
| NarL | 37-43 | 8.993 |
| CueR | 262-280 | 8.914 |
| ModE | 343-369 | 8.906 |
| FhlA | 315-354 | 8.594 |
| AraC | 36-53 | 8.569 |
| NarP | 215-221 | 8.306 |
| TorR | 130-139 | 7.901 |
| DeoR | 154-169 | 7.686 |
| TrpR | 285-302 | 6.590 |
| DnaA | 57-65 | 6.459 |
| LacI | 185-205 | 6.301 |