| TF name | Position | PWM scan score |
| ArcA | 299-359 | 26.177 |
| Mlc | 332-354 | 19.946 |
| CysB | 321-362 | 19.932 |
| DcuR | 310-364 | 17.473 |
| CytR | 312-351 | 17.378 |
| OxyR | 316-360 | 17.275 |
| AgaR | 314-337 | 16.856 |
| NagC | 333-355 | 16.661 |
| FNR | 290-311 | 16.149 |
| IHF | 299-311 | 15.033 |
| UlaR | 315-334 | 14.994 |
| Nac | 226-240 | 14.975 |
| NorR | 160-176 | 14.875 |
| OmpR | 368-387 | 14.796 |
| Rob | 80-100 | 14.509 |
| PspF | 303-319 | 13.727 |
| MetR | 338-361 | 13.587 |
| MarA | 2-22 | 13.314 |
| PurR | 78-93 | 12.567 |
| XylR | 280-297 | 12.536 |
| ArgR | 346-361 | 12.377 |
| UxuR | 121-138 | 12.247 |
| H-NS | 83-97 | 12.101 |
| TyrR | 44-65 | 11.858 |
| CpxR | 321-335 | 11.646 |
| Lrp | 315-326 | 11.256 |
| Ada | 243-270 | 10.948 |
| GadE | 82-101 | 10.697 |
| GcvA | 43-71 | 10.634 |
| PhoB | 72-91 | 10.610 |
| PhoP | 320-336 | 10.529 |
| Fis | 83-103 | 10.368 |
| IdnR | 75-90 | 10.026 |
| NarL | 317-323 | 9.580 |
| SoxS | 284-301 | 9.523 |
| RcsB | 333-346 | 9.387 |
| TorR | 371-380 | 9.351 |
| CRP | 92-113 | 9.128 |
| MetJ | 209-216 | 8.714 |
| Fur | 77-91 | 8.703 |
| ArgP | 10-22 | 8.494 |
| AraC | 322-339 | 8.441 |
| GntR | 378-397 | 8.016 |
| DnaA | 184-192 | 7.924 |
| DeoR | 184-199 | 7.847 |
| ModE | 339-365 | 7.723 |
| MelR | 123-140 | 7.549 |
| RhaS | 12-28 | 7.358 |
| LexA | 129-148 | 7.349 |
| FhlA | 256-295 | 7.103 |
| GlpR | 94-113 | 6.998 |
| NarP | 333-339 | 6.657 |
| LacI | 83-103 | 6.029 |
| MalT | 281-290 | 5.929 |
| FadR | 279-295 | 5.413 |
| FruR | 171-188 | 5.100 |