| TF name | Position | PWM scan score |
| FNR | 86-107 | 20.356 |
| ArcA | 7-67 | 20.281 |
| OxyR | 68-112 | 16.851 |
| CysB | 317-358 | 16.060 |
| CytR | 233-272 | 15.972 |
| XylR | 137-154 | 15.211 |
| NagC | 221-243 | 14.861 |
| Fis | 224-244 | 14.715 |
| MarA | 41-61 | 14.528 |
| GcvA | 205-233 | 14.122 |
| Ada | 83-110 | 13.557 |
| RcsB | 278-291 | 13.555 |
| H-NS | 379-393 | 13.525 |
| CRP | 206-227 | 13.406 |
| UxuR | 197-214 | 13.063 |
| Fur | 272-286 | 12.662 |
| PhoB | 39-58 | 12.498 |
| OmpR | 83-102 | 12.470 |
| AraC | 275-292 | 12.269 |
| AgaR | 206-229 | 12.216 |
| PhoP | 13-29 | 11.867 |
| Mlc | 98-120 | 11.105 |
| CpxR | 15-29 | 11.053 |
| Nac | 216-230 | 10.972 |
| IHF | 81-93 | 10.955 |
| UlaR | 88-107 | 10.948 |
| GntR | 288-307 | 10.599 |
| Lrp | 36-47 | 10.515 |
| ArgR | 106-121 | 10.404 |
| GlpR | 28-47 | 10.329 |
| PspF | 43-59 | 10.111 |
| ArgP | 282-294 | 10.037 |
| MelR | 111-128 | 9.725 |
| Rob | 218-238 | 9.703 |
| GadE | 86-105 | 9.696 |
| MetJ | 104-111 | 9.682 |
| TrpR | 315-332 | 9.676 |
| NarL | 280-286 | 9.444 |
| TorR | 268-277 | 9.359 |
| FadR | 253-269 | 8.926 |
| FruR | 63-80 | 8.001 |
| ModE | 224-250 | 7.749 |
| RhaS | 198-214 | 7.595 |
| TyrR | 59-80 | 7.168 |
| DeoR | 314-329 | 7.091 |
| SoxS | 80-97 | 6.991 |
| MetR | 315-338 | 6.712 |
| NarP | 281-287 | 6.591 |
| NtrC | 218-234 | 6.501 |
| IdnR | 258-273 | 6.279 |
| LacI | 318-338 | 5.740 |
| DnaA | 102-110 | 5.637 |
| CueR | 332-350 | 5.617 |
| LexA | 104-123 | 5.237 |