| TF name | Position | PWM scan score |
| ArcA | 231-291 | 24.783 |
| NagC | 244-266 | 23.919 |
| CysB | 246-287 | 21.587 |
| Mlc | 336-358 | 20.039 |
| OmpR | 240-259 | 17.682 |
| OxyR | 317-361 | 17.144 |
| NorR | 89-105 | 16.547 |
| GadE | 14-33 | 15.584 |
| FNR | 45-66 | 15.210 |
| Fur | 253-267 | 15.082 |
| PspF | 159-175 | 15.080 |
| MarA | 49-69 | 14.269 |
| DcuR | 24-78 | 13.837 |
| H-NS | 253-267 | 13.808 |
| Rob | 52-72 | 13.790 |
| MelR | 269-286 | 13.700 |
| Nac | 257-271 | 13.294 |
| UlaR | 46-65 | 12.623 |
| RcsB | 256-269 | 12.435 |
| MetR | 341-364 | 12.421 |
| CRP | 42-63 | 12.319 |
| GcvA | 259-287 | 12.319 |
| Fis | 342-362 | 12.141 |
| MetJ | 220-227 | 11.889 |
| CpxR | 52-66 | 11.828 |
| IHF | 253-265 | 11.649 |
| TyrR | 235-256 | 11.593 |
| FhlA | 303-342 | 11.512 |
| AraC | 88-105 | 11.503 |
| AgaR | 57-80 | 11.373 |
| CytR | 334-373 | 11.216 |
| XylR | 155-172 | 10.991 |
| Lrp | 256-267 | 10.929 |
| GalR | 60-75 | 10.875 |
| GalS | 60-75 | 10.875 |
| PhoB | 47-66 | 10.822 |
| ModE | 3-29 | 10.719 |
| GlpR | 242-261 | 10.462 |
| ArgR | 348-363 | 10.127 |
| PhoP | 45-61 | 9.977 |
| ArgP | 56-68 | 9.930 |
| SoxS | 177-194 | 9.749 |
| NarL | 260-266 | 9.376 |
| DeoR | 154-169 | 9.329 |
| GntR | 250-269 | 8.836 |
| LexA | 8-27 | 8.739 |
| UxuR | 159-176 | 8.648 |
| DnaA | 339-347 | 7.924 |
| TorR | 151-160 | 7.456 |
| FruR | 61-78 | 7.011 |
| NtrC | 376-392 | 7.008 |
| RhaS | 225-241 | 6.840 |
| IdnR | 47-62 | 6.823 |
| MalT | 172-181 | 6.745 |
| NarP | 355-361 | 6.657 |
| Ada | 352-379 | 6.543 |
| LacI | 190-210 | 5.505 |