| TF name | Position | PWM scan score |
| ArcA | 332-392 | 37.921 |
| OmpR | 366-385 | 21.093 |
| OxyR | 346-390 | 20.541 |
| PhoB | 187-206 | 18.999 |
| DeoR | 372-387 | 18.972 |
| GcvA | 362-390 | 18.300 |
| CysB | 344-385 | 18.128 |
| CytR | 323-362 | 17.134 |
| GadE | 372-391 | 17.122 |
| AgaR | 254-277 | 16.602 |
| CRP | 360-381 | 15.801 |
| H-NS | 365-379 | 15.657 |
| NagC | 366-388 | 15.517 |
| Fis | 369-389 | 15.128 |
| ArgP | 375-387 | 15.033 |
| UlaR | 282-301 | 14.621 |
| FNR | 326-347 | 13.747 |
| CpxR | 363-377 | 13.554 |
| Nac | 6-20 | 13.463 |
| Rob | 374-394 | 13.106 |
| Mlc | 263-285 | 13.057 |
| XylR | 152-169 | 12.717 |
| IHF | 376-388 | 12.698 |
| PhoP | 362-378 | 12.669 |
| ModE | 357-383 | 12.556 |
| DcuR | 72-126 | 12.239 |
| SoxS | 351-368 | 11.978 |
| GntR | 71-90 | 11.949 |
| AraC | 105-122 | 11.746 |
| NorR | 284-300 | 11.729 |
| ArgR | 332-347 | 11.528 |
| PspF | 337-353 | 11.511 |
| Ada | 256-283 | 11.116 |
| MarA | 367-387 | 11.100 |
| TyrR | 275-296 | 11.014 |
| Lrp | 279-290 | 10.971 |
| RcsB | 250-263 | 10.697 |
| FruR | 242-259 | 10.526 |
| FadR | 339-355 | 10.330 |
| TorR | 68-77 | 9.719 |
| NarL | 9-15 | 9.580 |
| GlpR | 202-221 | 8.951 |
| FhlA | 69-108 | 8.720 |
| Fur | 371-385 | 8.703 |
| MelR | 353-370 | 8.662 |
| MalT | 114-123 | 8.612 |
| MetJ | 71-78 | 8.430 |
| IdnR | 330-345 | 8.421 |
| LacI | 213-233 | 7.946 |
| UxuR | 202-219 | 7.859 |
| PurR | 94-109 | 7.677 |
| DnaA | 251-259 | 7.425 |
| MetR | 100-123 | 7.424 |
| NarP | 156-162 | 6.781 |
| GalR | 171-186 | 6.653 |
| GalS | 171-186 | 6.653 |
| TrpR | 270-287 | 5.694 |