| TF name | Position | PWM scan score |
| ArcA | 23-83 | 29.428 |
| OxyR | 317-361 | 20.566 |
| GadE | 27-46 | 19.474 |
| CytR | 181-220 | 18.424 |
| IHF | 179-191 | 16.800 |
| NagC | 321-343 | 16.659 |
| Nac | 332-346 | 16.563 |
| MarA | 196-216 | 16.111 |
| UxuR | 184-201 | 15.625 |
| DnaA | 150-158 | 15.414 |
| OmpR | 332-351 | 15.375 |
| H-NS | 183-197 | 15.300 |
| CRP | 316-337 | 15.048 |
| CysB | 180-221 | 14.858 |
| GcvA | 330-358 | 14.837 |
| Fur | 22-36 | 14.343 |
| FNR | 319-340 | 14.055 |
| AraC | 340-357 | 13.615 |
| Mlc | 257-279 | 13.140 |
| RcsB | 44-57 | 12.803 |
| XylR | 43-60 | 12.788 |
| Rob | 343-363 | 12.693 |
| IdnR | 275-290 | 12.628 |
| PhoP | 118-134 | 12.336 |
| Ada | 261-288 | 12.311 |
| UlaR | 109-128 | 12.178 |
| Fis | 11-31 | 12.178 |
| DcuR | 302-356 | 12.031 |
| SoxS | 55-72 | 11.837 |
| FhlA | 65-104 | 11.778 |
| FruR | 176-193 | 11.767 |
| MetR | 224-247 | 11.601 |
| PhoB | 203-222 | 11.483 |
| AgaR | 327-350 | 11.381 |
| Lrp | 43-54 | 11.338 |
| LacI | 48-68 | 11.139 |
| CpxR | 287-301 | 11.044 |
| ModE | 32-58 | 11.014 |
| ArgR | 204-219 | 10.933 |
| TorR | 351-360 | 10.903 |
| MelR | 19-36 | 9.947 |
| TyrR | 204-225 | 9.847 |
| PspF | 282-298 | 9.819 |
| MetJ | 202-209 | 9.635 |
| RhaS | 32-48 | 9.634 |
| NorR | 333-349 | 9.604 |
| ArgP | 64-76 | 9.519 |
| DeoR | 199-214 | 9.393 |
| GalS | 206-221 | 9.374 |
| GalR | 206-221 | 9.374 |
| NarL | 284-290 | 9.333 |
| GlpR | 21-40 | 8.679 |
| GntR | 343-362 | 7.590 |
| FadR | 379-395 | 7.346 |
| PurR | 23-38 | 7.067 |
| NtrC | 280-296 | 6.566 |
| NarP | 309-315 | 5.566 |