| TF name | Position | PWM scan score |
| ArcA | 331-391 | 29.314 |
| CysB | 322-363 | 20.827 |
| Fur | 358-372 | 19.333 |
| CytR | 294-333 | 18.203 |
| Nac | 106-120 | 17.799 |
| OmpR | 354-373 | 17.716 |
| PhoB | 358-377 | 17.636 |
| FNR | 351-372 | 16.390 |
| H-NS | 355-369 | 14.541 |
| MetR | 203-226 | 13.764 |
| IHF | 321-333 | 13.179 |
| GcvA | 360-388 | 13.109 |
| TyrR | 361-382 | 12.964 |
| FruR | 5-22 | 12.870 |
| PhoP | 352-368 | 12.834 |
| IdnR | 47-62 | 12.175 |
| XylR | 51-68 | 12.149 |
| NagC | 217-239 | 11.837 |
| Fis | 347-367 | 11.694 |
| PurR | 290-305 | 11.591 |
| GadE | 354-373 | 11.517 |
| SoxS | 196-213 | 11.421 |
| UlaR | 287-306 | 11.274 |
| RcsB | 324-337 | 11.258 |
| CpxR | 167-181 | 11.250 |
| DcuR | 321-375 | 11.125 |
| PspF | 355-371 | 11.068 |
| ArgP | 353-365 | 10.920 |
| Lrp | 363-374 | 10.867 |
| CRP | 367-388 | 10.395 |
| ModE | 354-380 | 10.232 |
| ArgR | 322-337 | 10.152 |
| Rob | 345-365 | 10.152 |
| DnaA | 146-154 | 9.939 |
| DeoR | 371-386 | 9.865 |
| OxyR | 315-359 | 9.702 |
| Mlc | 368-390 | 9.656 |
| MelR | 358-375 | 9.378 |
| FadR | 200-216 | 9.377 |
| NtrC | 315-331 | 9.146 |
| Ada | 155-182 | 8.987 |
| AgaR | 365-388 | 8.869 |
| NarL | 178-184 | 8.545 |
| GlpR | 349-368 | 8.027 |
| MarA | 194-214 | 7.817 |
| FhlA | 219-258 | 7.768 |
| UxuR | 176-193 | 7.607 |
| MetJ | 111-118 | 7.542 |
| MalT | 144-153 | 7.400 |
| GalS | 363-378 | 6.827 |
| GalR | 363-378 | 6.827 |
| NarP | 114-120 | 6.794 |
| TorR | 350-359 | 6.396 |
| NorR | 308-324 | 6.290 |
| AraC | 359-376 | 6.203 |
| CueR | 18-36 | 6.144 |
| GntR | 139-158 | 5.867 |