| TF name | Position | PWM scan score |
| ArcA | 329-389 | 30.324 |
| CysB | 346-387 | 20.970 |
| CytR | 341-380 | 17.346 |
| GcvA | 213-241 | 16.811 |
| Mlc | 2-24 | 16.669 |
| NagC | 339-361 | 16.295 |
| OmpR | 340-359 | 15.445 |
| CpxR | 347-361 | 14.747 |
| PhoP | 20-36 | 14.661 |
| H-NS | 369-383 | 14.517 |
| Nac | 368-382 | 14.141 |
| Lrp | 369-380 | 13.972 |
| Fur | 241-255 | 13.066 |
| DcuR | 92-146 | 13.028 |
| Ada | 329-356 | 12.902 |
| RcsB | 190-203 | 12.738 |
| FNR | 345-366 | 12.320 |
| CRP | 342-363 | 12.314 |
| Fis | 369-389 | 12.145 |
| ModE | 359-385 | 12.038 |
| GadE | 349-368 | 11.094 |
| IHF | 217-229 | 11.028 |
| MarA | 335-355 | 10.756 |
| ArgR | 358-373 | 10.669 |
| PspF | 315-331 | 10.524 |
| AraC | 184-201 | 10.507 |
| SoxS | 9-26 | 10.201 |
| Rob | 52-72 | 10.095 |
| TyrR | 362-383 | 9.958 |
| MetR | 326-349 | 9.907 |
| DeoR | 155-170 | 9.816 |
| GntR | 367-386 | 9.668 |
| OxyR | 341-385 | 9.665 |
| MetJ | 356-363 | 9.382 |
| AgaR | 13-36 | 9.310 |
| NarL | 377-383 | 9.240 |
| FadR | 357-373 | 9.138 |
| PhoB | 362-381 | 9.113 |
| DnaA | 347-355 | 8.892 |
| IdnR | 344-359 | 8.757 |
| UlaR | 344-363 | 8.721 |
| ArgP | 17-29 | 8.671 |
| FruR | 187-204 | 8.641 |
| TorR | 327-336 | 8.457 |
| MalT | 328-337 | 8.367 |
| NarP | 272-278 | 8.031 |
| UxuR | 342-359 | 7.604 |
| GlpR | 8-27 | 6.972 |
| XylR | 338-355 | 6.898 |
| GalS | 1-16 | 6.211 |
| GalR | 1-16 | 6.211 |
| NorR | 19-35 | 5.860 |
| LexA | 354-373 | 5.544 |
| NtrC | 108-124 | 5.435 |
| MelR | 102-119 | 5.260 |
| PurR | 218-233 | 5.232 |
| LacI | 167-187 | 5.216 |