| TF name | Position | PWM scan score |
| ArcA | 332-392 | 24.027 |
| CytR | 284-323 | 21.791 |
| OxyR | 212-256 | 20.459 |
| MetR | 300-323 | 18.733 |
| DeoR | 71-86 | 18.472 |
| OmpR | 369-388 | 17.677 |
| PhoP | 244-260 | 17.010 |
| Rob | 245-265 | 16.875 |
| GcvA | 249-277 | 15.415 |
| CysB | 134-175 | 15.412 |
| RcsB | 246-259 | 15.173 |
| H-NS | 370-384 | 14.735 |
| TyrR | 311-332 | 14.479 |
| XylR | 126-143 | 14.412 |
| NorR | 78-94 | 13.448 |
| Nac | 53-67 | 13.415 |
| Fis | 176-196 | 13.083 |
| FNR | 51-72 | 12.813 |
| AgaR | 358-381 | 12.679 |
| NagC | 313-335 | 12.628 |
| IHF | 259-271 | 12.472 |
| CRP | 251-272 | 12.380 |
| UlaR | 305-324 | 12.123 |
| GadE | 292-311 | 11.527 |
| GalR | 283-298 | 11.319 |
| GalS | 283-298 | 11.319 |
| Mlc | 49-71 | 11.256 |
| Lrp | 308-319 | 11.082 |
| PhoB | 22-41 | 11.052 |
| GntR | 367-386 | 11.020 |
| ArgR | 363-378 | 10.712 |
| SoxS | 233-250 | 10.157 |
| NarL | 280-286 | 10.130 |
| CpxR | 330-344 | 9.921 |
| IdnR | 357-372 | 9.838 |
| DnaA | 253-261 | 9.731 |
| ModE | 21-47 | 9.464 |
| UxuR | 279-296 | 9.306 |
| PspF | 275-291 | 9.265 |
| ArgP | 132-144 | 9.165 |
| GlpR | 49-68 | 8.752 |
| DcuR | 241-295 | 8.737 |
| MelR | 104-121 | 8.586 |
| MetJ | 137-144 | 8.379 |
| Fur | 155-169 | 8.222 |
| LexA | 368-387 | 8.150 |
| MarA | 42-62 | 8.037 |
| PurR | 234-249 | 7.787 |
| LacI | 66-86 | 7.328 |
| Ada | 297-324 | 7.191 |
| RhaS | 114-130 | 6.905 |
| AraC | 21-38 | 6.805 |
| TrpR | 292-309 | 6.566 |
| TorR | 314-323 | 5.907 |
| MalT | 328-337 | 5.806 |
| NarP | 287-293 | 5.610 |
| FadR | 365-381 | 5.260 |
| FruR | 361-378 | 5.022 |