| TF name | Position | PWM scan score |
| ArcA | 266-326 | 21.785 |
| CytR | 222-261 | 18.889 |
| LexA | 183-202 | 17.029 |
| Mlc | 201-223 | 16.175 |
| PhoB | 189-208 | 15.679 |
| GadE | 266-285 | 14.035 |
| OxyR | 270-314 | 13.923 |
| SoxS | 300-317 | 13.876 |
| XylR | 213-230 | 13.330 |
| UlaR | 213-232 | 13.295 |
| OmpR | 375-394 | 13.125 |
| IHF | 272-284 | 12.813 |
| PspF | 190-206 | 12.683 |
| Fis | 285-305 | 12.601 |
| Rob | 310-330 | 12.592 |
| CysB | 275-316 | 12.571 |
| MarA | 132-152 | 12.101 |
| Lrp | 216-227 | 11.957 |
| AraC | 272-289 | 11.860 |
| CRP | 293-314 | 11.849 |
| ArgP | 308-320 | 11.464 |
| DeoR | 259-274 | 11.327 |
| ArgR | 198-213 | 11.184 |
| Nac | 323-337 | 11.014 |
| H-NS | 295-309 | 10.820 |
| NagC | 231-253 | 10.697 |
| RcsB | 199-212 | 10.346 |
| Fur | 313-327 | 10.278 |
| IdnR | 369-384 | 10.214 |
| GcvA | 240-268 | 9.972 |
| GntR | 23-42 | 9.565 |
| NarL | 201-207 | 9.444 |
| GalS | 336-351 | 9.250 |
| GalR | 336-351 | 9.250 |
| FadR | 21-37 | 8.922 |
| AgaR | 1-24 | 8.262 |
| CueR | 174-192 | 8.236 |
| TyrR | 211-232 | 8.163 |
| FNR | 293-314 | 8.019 |
| CpxR | 177-191 | 8.000 |
| PhoP | 169-185 | 7.911 |
| GlpR | 309-328 | 7.865 |
| Ada | 361-388 | 7.849 |
| MetR | 208-231 | 7.777 |
| TorR | 292-301 | 7.771 |
| DcuR | 240-294 | 7.431 |
| NorR | 371-387 | 7.371 |
| NarP | 347-353 | 7.347 |
| PurR | 273-288 | 7.187 |
| NtrC | 240-256 | 7.008 |
| ModE | 191-217 | 6.934 |
| LacI | 21-41 | 6.818 |
| UxuR | 171-188 | 6.620 |
| MelR | 276-293 | 6.211 |
| TrpR | 367-384 | 5.633 |
| FruR | 95-112 | 5.561 |