| TF name | Position | PWM scan score |
| ArcA | 282-342 | 32.983 |
| DcuR | 276-330 | 24.867 |
| GadE | 124-143 | 21.106 |
| NagC | 373-395 | 20.024 |
| AgaR | 334-357 | 19.786 |
| FNR | 355-376 | 18.801 |
| CysB | 23-64 | 18.782 |
| GlpR | 354-373 | 18.358 |
| CytR | 263-302 | 17.471 |
| CRP | 352-373 | 17.376 |
| Rob | 114-134 | 16.200 |
| OmpR | 120-139 | 16.184 |
| IHF | 71-83 | 15.920 |
| H-NS | 76-90 | 15.595 |
| UxuR | 160-177 | 15.269 |
| DeoR | 317-332 | 15.064 |
| UlaR | 309-328 | 15.020 |
| PhoB | 228-247 | 14.949 |
| RcsB | 134-147 | 14.839 |
| OxyR | 133-177 | 14.458 |
| TyrR | 307-328 | 13.980 |
| Mlc | 344-366 | 13.543 |
| Fur | 330-344 | 13.478 |
| Fis | 351-371 | 13.466 |
| ArgR | 338-353 | 13.144 |
| GcvA | 61-89 | 12.724 |
| GntR | 63-82 | 12.113 |
| MarA | 121-141 | 12.040 |
| FadR | 166-182 | 12.030 |
| ModE | 364-390 | 11.807 |
| Lrp | 199-210 | 11.609 |
| MetR | 256-279 | 11.496 |
| MetJ | 177-184 | 11.100 |
| Ada | 304-331 | 10.938 |
| CpxR | 316-330 | 10.899 |
| PhoP | 340-356 | 10.794 |
| TorR | 372-381 | 10.649 |
| IdnR | 25-40 | 10.597 |
| PurR | 155-170 | 10.501 |
| NorR | 318-334 | 10.470 |
| XylR | 371-388 | 10.407 |
| Nac | 64-78 | 10.276 |
| SoxS | 154-171 | 10.153 |
| ArgP | 360-372 | 10.118 |
| AraC | 160-177 | 9.902 |
| PspF | 201-217 | 9.698 |
| NarL | 332-338 | 8.932 |
| NarP | 213-219 | 8.372 |
| MelR | 193-210 | 8.371 |
| DnaA | 175-183 | 8.160 |
| FruR | 197-214 | 7.994 |
| LacI | 307-327 | 7.607 |
| CaiF | 289-333 | 7.490 |
| FhlA | 139-178 | 7.477 |
| NtrC | 369-385 | 7.254 |
| LexA | 169-188 | 6.677 |
| MalT | 269-278 | 6.192 |