| TF name | Position | PWM scan score |
| ArcA | 120-180 | 30.823 |
| CytR | 136-175 | 20.873 |
| Fur | 148-162 | 20.466 |
| AraC | 76-93 | 18.688 |
| CysB | 111-152 | 18.462 |
| PhoP | 134-150 | 17.605 |
| IHF | 154-166 | 17.156 |
| FNR | 148-169 | 16.591 |
| OxyR | 125-169 | 16.541 |
| GntR | 114-133 | 16.346 |
| CpxR | 112-126 | 15.179 |
| NagC | 65-87 | 14.759 |
| OmpR | 112-131 | 14.527 |
| Nac | 146-160 | 14.218 |
| FhlA | 112-151 | 14.025 |
| TyrR | 13-34 | 13.711 |
| Rob | 257-277 | 13.679 |
| Fis | 111-131 | 12.925 |
| H-NS | 83-97 | 12.899 |
| ArgP | 146-158 | 12.634 |
| GlpR | 122-141 | 12.265 |
| Lrp | 114-125 | 12.193 |
| SoxS | 117-134 | 11.665 |
| CRP | 145-166 | 11.621 |
| AgaR | 105-128 | 11.430 |
| DcuR | 128-182 | 11.420 |
| IdnR | 122-137 | 11.097 |
| PurR | 102-117 | 10.990 |
| ArgR | 150-165 | 10.747 |
| Mlc | 109-131 | 10.556 |
| NarL | 149-155 | 10.377 |
| RhaS | 347-363 | 10.340 |
| DeoR | 110-125 | 10.294 |
| ModE | 247-273 | 10.245 |
| GadE | 157-176 | 10.044 |
| PhoB | 117-136 | 9.821 |
| UlaR | 143-162 | 9.755 |
| NtrC | 79-95 | 9.452 |
| PspF | 106-122 | 9.426 |
| UxuR | 259-276 | 9.279 |
| Ada | 230-257 | 9.081 |
| FadR | 92-108 | 8.982 |
| XylR | 14-31 | 8.881 |
| DnaA | 348-356 | 8.729 |
| MelR | 164-181 | 8.225 |
| NarP | 154-160 | 7.740 |
| GcvA | 81-109 | 7.739 |
| MetR | 121-144 | 7.708 |
| GalR | 228-243 | 7.697 |
| GalS | 228-243 | 7.697 |
| MarA | 147-167 | 7.555 |
| TorR | 65-74 | 7.390 |
| RcsB | 79-92 | 7.328 |
| CueR | 210-228 | 7.222 |
| FruR | 72-89 | 6.969 |
| TrpR | 245-262 | 5.418 |