| TF name | Position | PWM scan score |
| CysB | 343-384 | 34.739 |
| ArcA | 333-393 | 31.787 |
| OxyR | 353-397 | 19.410 |
| CaiF | 343-387 | 16.544 |
| GcvA | 330-358 | 16.421 |
| UlaR | 145-164 | 16.372 |
| Nac | 359-373 | 15.646 |
| Mlc | 360-382 | 15.094 |
| H-NS | 379-393 | 15.008 |
| CytR | 355-394 | 14.952 |
| OmpR | 378-397 | 14.923 |
| Fur | 361-375 | 14.703 |
| Fis | 83-103 | 14.437 |
| DeoR | 365-380 | 14.299 |
| CRP | 361-382 | 14.244 |
| FNR | 358-379 | 14.163 |
| AgaR | 359-382 | 13.881 |
| Rob | 238-258 | 13.558 |
| PhoB | 275-294 | 13.353 |
| IHF | 257-269 | 13.138 |
| PhoP | 344-360 | 12.838 |
| Lrp | 388-399 | 12.720 |
| UxuR | 211-228 | 12.455 |
| DcuR | 293-347 | 12.323 |
| ArgR | 239-254 | 12.215 |
| RcsB | 386-399 | 11.920 |
| TorR | 85-94 | 11.843 |
| AraC | 350-367 | 11.500 |
| ArgP | 384-396 | 11.464 |
| GlpR | 126-145 | 11.166 |
| NagC | 370-392 | 11.110 |
| Ada | 133-160 | 10.918 |
| SoxS | 270-287 | 10.864 |
| NtrC | 309-325 | 10.574 |
| MetR | 338-361 | 10.432 |
| CpxR | 355-369 | 10.181 |
| GadE | 337-356 | 9.857 |
| MetJ | 25-32 | 9.804 |
| NarL | 138-144 | 9.482 |
| NorR | 129-145 | 8.882 |
| LacI | 150-170 | 8.799 |
| XylR | 145-162 | 8.548 |
| ModE | 257-283 | 8.476 |
| MarA | 13-33 | 7.879 |
| NarP | 367-373 | 7.740 |
| TyrR | 143-164 | 7.622 |
| GntR | 359-378 | 7.442 |
| PspF | 377-393 | 7.210 |
| DnaA | 355-363 | 7.045 |
| IdnR | 285-300 | 6.823 |
| FadR | 120-136 | 6.720 |
| MelR | 348-365 | 6.158 |
| MalT | 219-228 | 5.404 |
| FhlA | 163-202 | 5.039 |