| TF name | Position | PWM scan score |
| ArcA | 334-394 | 29.083 |
| CysB | 333-374 | 21.347 |
| CytR | 338-377 | 19.707 |
| OxyR | 346-390 | 18.121 |
| OmpR | 302-321 | 17.120 |
| H-NS | 315-329 | 16.772 |
| TyrR | 322-343 | 16.529 |
| AgaR | 291-314 | 16.211 |
| Rob | 302-322 | 15.899 |
| Fis | 103-123 | 15.682 |
| NagC | 295-317 | 15.024 |
| PhoP | 103-119 | 14.891 |
| ArgR | 380-395 | 14.721 |
| CRP | 296-317 | 14.626 |
| Nac | 24-38 | 14.592 |
| FNR | 221-242 | 14.346 |
| DnaA | 172-180 | 13.213 |
| IdnR | 160-175 | 13.004 |
| GntR | 194-213 | 12.559 |
| AraC | 332-349 | 12.317 |
| Lrp | 110-121 | 12.044 |
| IHF | 299-311 | 11.995 |
| DcuR | 310-364 | 11.913 |
| PspF | 368-384 | 11.867 |
| TorR | 112-121 | 11.843 |
| Fur | 103-117 | 11.834 |
| DeoR | 343-358 | 11.804 |
| ModE | 361-387 | 11.674 |
| Mlc | 295-317 | 11.335 |
| UlaR | 284-303 | 11.098 |
| GadE | 376-395 | 11.094 |
| ArgP | 66-78 | 10.853 |
| GcvA | 332-360 | 10.757 |
| MarA | 370-390 | 10.554 |
| FruR | 158-175 | 10.297 |
| RcsB | 29-42 | 10.159 |
| MetJ | 71-78 | 9.765 |
| NarP | 194-200 | 9.477 |
| GlpR | 309-328 | 9.469 |
| SoxS | 372-389 | 9.250 |
| NarL | 27-33 | 9.129 |
| NorR | 325-341 | 8.704 |
| XylR | 214-231 | 8.646 |
| UxuR | 328-345 | 8.487 |
| FadR | 229-245 | 8.327 |
| RhaS | 332-348 | 7.941 |
| CpxR | 300-314 | 7.939 |
| PhoB | 315-334 | 7.651 |
| FhlA | 300-339 | 7.333 |
| Ada | 194-221 | 7.221 |
| GalR | 300-315 | 6.934 |
| GalS | 300-315 | 6.934 |
| LexA | 345-364 | 6.886 |
| MetR | 361-384 | 6.752 |
| MelR | 283-300 | 6.248 |
| NtrC | 62-78 | 6.093 |