| TF name | Position | PWM scan score |
| ArcA | 295-355 | 31.570 |
| Ada | 39-66 | 21.252 |
| CytR | 313-352 | 20.568 |
| GadE | 321-340 | 20.353 |
| OmpR | 321-340 | 19.258 |
| CysB | 293-334 | 18.806 |
| UlaR | 235-254 | 17.992 |
| PhoB | 76-95 | 17.358 |
| NagC | 303-325 | 16.779 |
| DcuR | 79-133 | 16.745 |
| FNR | 319-340 | 16.193 |
| MetR | 305-328 | 16.007 |
| CRP | 77-98 | 16.003 |
| OxyR | 261-305 | 15.018 |
| Rob | 153-173 | 14.970 |
| RcsB | 290-303 | 14.618 |
| H-NS | 324-338 | 14.318 |
| IHF | 328-340 | 14.172 |
| Fis | 32-52 | 13.779 |
| GcvA | 93-121 | 13.638 |
| CpxR | 328-342 | 13.554 |
| IdnR | 246-261 | 13.172 |
| AraC | 240-257 | 13.042 |
| AgaR | 336-359 | 12.805 |
| Lrp | 243-254 | 12.626 |
| FhlA | 57-96 | 12.396 |
| PhoP | 82-98 | 12.128 |
| Nac | 258-272 | 11.958 |
| DeoR | 81-96 | 11.317 |
| UxuR | 289-306 | 11.270 |
| PurR | 36-51 | 10.989 |
| ModE | 86-112 | 10.971 |
| PspF | 331-347 | 10.618 |
| MarA | 78-98 | 10.507 |
| MelR | 40-57 | 10.464 |
| Mlc | 318-340 | 10.393 |
| ArgP | 374-386 | 9.643 |
| NorR | 7-23 | 9.503 |
| GlpR | 316-335 | 9.311 |
| NarL | 94-100 | 9.240 |
| XylR | 372-389 | 9.190 |
| Fur | 32-46 | 8.910 |
| TyrR | 308-329 | 8.730 |
| DnaA | 160-168 | 8.618 |
| SoxS | 71-88 | 8.518 |
| GalS | 73-88 | 7.799 |
| GalR | 73-88 | 7.799 |
| MalT | 8-17 | 7.310 |
| FadR | 84-100 | 7.132 |
| TorR | 169-178 | 7.080 |
| NarP | 376-382 | 6.794 |
| ArgR | 131-146 | 6.758 |
| NtrC | 367-383 | 6.744 |
| GntR | 84-103 | 6.737 |
| MetJ | 219-226 | 5.608 |
| FruR | 293-310 | 5.550 |
| LexA | 255-274 | 5.268 |