| TF name | Position | PWM scan score |
| ArcA | 241-301 | 27.847 |
| Mlc | 296-318 | 27.323 |
| CytR | 260-299 | 21.307 |
| NagC | 298-320 | 19.348 |
| Ada | 258-285 | 18.959 |
| CysB | 244-285 | 18.085 |
| FNR | 277-298 | 16.867 |
| MarA | 73-93 | 16.763 |
| Fur | 291-305 | 16.039 |
| NorR | 257-273 | 15.483 |
| OxyR | 244-288 | 15.425 |
| GcvA | 5-33 | 15.375 |
| LacI | 338-358 | 15.054 |
| DcuR | 226-280 | 14.647 |
| AraC | 291-308 | 14.225 |
| RcsB | 295-308 | 14.102 |
| IHF | 291-303 | 14.098 |
| OmpR | 277-296 | 14.019 |
| H-NS | 242-256 | 13.396 |
| UlaR | 38-57 | 13.387 |
| AgaR | 213-236 | 13.352 |
| PhoB | 312-331 | 13.249 |
| PhoP | 284-300 | 13.123 |
| MelR | 131-148 | 12.847 |
| CpxR | 174-188 | 12.130 |
| Lrp | 294-305 | 11.826 |
| PspF | 379-395 | 11.595 |
| UxuR | 260-277 | 11.542 |
| Rob | 255-275 | 11.535 |
| Fis | 119-139 | 11.528 |
| CRP | 274-295 | 11.207 |
| FadR | 129-145 | 11.132 |
| ArgP | 315-327 | 11.123 |
| ArgR | 378-393 | 11.111 |
| ModE | 80-106 | 10.946 |
| MetR | 256-279 | 10.321 |
| TyrR | 294-315 | 10.175 |
| SoxS | 67-84 | 9.892 |
| GadE | 281-300 | 9.789 |
| NarL | 381-387 | 9.580 |
| XylR | 287-304 | 9.420 |
| DeoR | 120-135 | 9.300 |
| DnaA | 85-93 | 8.892 |
| GntR | 354-373 | 8.811 |
| RhaS | 329-345 | 8.444 |
| Nac | 222-236 | 8.417 |
| NarP | 267-273 | 8.306 |
| TorR | 270-279 | 8.217 |
| FhlA | 224-263 | 7.555 |
| MetJ | 211-218 | 7.197 |
| GlpR | 118-137 | 7.123 |
| IdnR | 344-359 | 6.524 |
| MalT | 53-62 | 6.475 |
| PurR | 292-307 | 5.986 |
| FruR | 218-235 | 5.150 |