| TF name | Position | PWM scan score |
| FhlA | 226-265 | 21.384 |
| ArcA | 243-303 | 19.338 |
| Ada | 361-388 | 18.180 |
| CysB | 213-254 | 17.302 |
| ModE | 338-364 | 17.035 |
| OxyR | 223-267 | 16.586 |
| Fur | 220-234 | 16.283 |
| AgaR | 257-280 | 16.191 |
| OmpR | 376-395 | 16.103 |
| LexA | 144-163 | 15.087 |
| TyrR | 345-366 | 14.780 |
| FNR | 231-252 | 14.277 |
| UxuR | 318-335 | 14.124 |
| MetR | 211-234 | 14.053 |
| UlaR | 76-95 | 13.903 |
| GadE | 325-344 | 13.249 |
| NagC | 376-398 | 12.965 |
| NorR | 225-241 | 12.706 |
| CytR | 251-290 | 12.444 |
| RcsB | 252-265 | 12.212 |
| IHF | 254-266 | 12.075 |
| H-NS | 352-366 | 11.847 |
| CRP | 120-141 | 11.598 |
| Rob | 273-293 | 11.440 |
| IdnR | 236-251 | 11.362 |
| MetJ | 335-342 | 11.315 |
| Lrp | 350-361 | 11.222 |
| Nac | 274-288 | 11.057 |
| PhoP | 323-339 | 10.874 |
| PhoB | 244-263 | 10.771 |
| LacI | 286-306 | 10.575 |
| Fis | 221-241 | 10.352 |
| TorR | 112-121 | 10.350 |
| DcuR | 256-310 | 10.245 |
| CpxR | 232-246 | 10.173 |
| DeoR | 150-165 | 9.998 |
| NarL | 280-286 | 9.580 |
| DnaA | 280-288 | 9.025 |
| ArgR | 277-292 | 9.019 |
| MalT | 144-153 | 8.657 |
| SoxS | 272-289 | 8.633 |
| XylR | 219-236 | 8.412 |
| PspF | 219-235 | 8.385 |
| Mlc | 374-396 | 7.683 |
| GlpR | 379-398 | 7.406 |
| GcvA | 275-303 | 7.155 |
| AraC | 274-291 | 7.032 |
| MelR | 364-381 | 6.987 |
| GntR | 49-68 | 6.902 |
| MarA | 66-86 | 6.700 |
| ArgP | 277-289 | 6.468 |
| PurR | 47-62 | 6.336 |
| FadR | 61-77 | 6.334 |
| FruR | 322-339 | 6.163 |
| NarP | 377-383 | 5.632 |
| TrpR | 375-392 | 5.376 |