| TF name | Position | PWM scan score |
| ArcA | 237-297 | 39.626 |
| CytR | 219-258 | 24.300 |
| NagC | 273-295 | 23.591 |
| CysB | 253-294 | 22.812 |
| Mlc | 270-292 | 21.335 |
| OxyR | 80-124 | 20.728 |
| OmpR | 48-67 | 19.387 |
| GadE | 274-293 | 18.962 |
| Fis | 276-296 | 18.403 |
| FNR | 264-285 | 17.881 |
| FhlA | 236-275 | 16.505 |
| GlpR | 50-69 | 16.480 |
| H-NS | 51-65 | 16.383 |
| SoxS | 10-27 | 16.275 |
| MetR | 250-273 | 15.711 |
| ModE | 279-305 | 15.691 |
| Nac | 212-226 | 15.469 |
| DcuR | 248-302 | 15.224 |
| PhoP | 63-79 | 15.204 |
| TyrR | 269-290 | 15.091 |
| CpxR | 272-286 | 14.807 |
| AgaR | 85-108 | 14.409 |
| UlaR | 204-223 | 14.342 |
| GcvA | 284-312 | 14.288 |
| IHF | 287-299 | 14.231 |
| UxuR | 201-218 | 14.141 |
| NorR | 236-252 | 14.039 |
| CRP | 42-63 | 13.982 |
| Fur | 284-298 | 13.836 |
| MarA | 50-70 | 13.580 |
| MelR | 351-368 | 13.566 |
| Lrp | 210-221 | 12.818 |
| PhoB | 284-303 | 12.659 |
| ArgP | 282-294 | 12.634 |
| RcsB | 208-221 | 12.399 |
| ArgR | 64-79 | 12.201 |
| DeoR | 329-344 | 12.074 |
| Ada | 85-112 | 12.029 |
| FadR | 22-38 | 11.481 |
| AraC | 113-130 | 11.342 |
| FruR | 12-29 | 11.066 |
| TorR | 257-266 | 10.851 |
| XylR | 286-303 | 10.748 |
| LexA | 77-96 | 10.508 |
| PspF | 172-188 | 10.148 |
| IdnR | 276-291 | 10.016 |
| TrpR | 96-113 | 9.985 |
| NarL | 177-183 | 8.928 |
| GntR | 211-230 | 8.890 |
| Rob | 271-291 | 8.743 |
| NtrC | 248-264 | 8.719 |
| DnaA | 272-280 | 8.160 |
| CueR | 376-394 | 7.581 |
| MetJ | 300-307 | 7.171 |
| RhaS | 243-259 | 6.525 |
| NarP | 42-48 | 5.610 |
| MalT | 73-82 | 5.031 |