| TF name | Position | PWM scan score |
| ArcA | 188-248 | 36.957 |
| CysB | 198-239 | 24.274 |
| OxyR | 208-252 | 21.700 |
| OmpR | 226-245 | 20.544 |
| AgaR | 217-240 | 20.088 |
| DcuR | 182-236 | 19.569 |
| NagC | 209-231 | 18.749 |
| GcvA | 221-249 | 18.426 |
| Mlc | 11-33 | 17.211 |
| GadE | 326-345 | 16.177 |
| PhoB | 188-207 | 16.146 |
| FNR | 205-226 | 15.751 |
| RcsB | 127-140 | 15.416 |
| H-NS | 18-32 | 15.260 |
| CytR | 157-196 | 15.198 |
| MetR | 305-328 | 14.939 |
| Fur | 123-137 | 14.601 |
| SoxS | 266-283 | 14.473 |
| Nac | 211-225 | 14.286 |
| ArgR | 274-289 | 14.265 |
| CRP | 231-252 | 14.196 |
| UlaR | 215-234 | 13.975 |
| DeoR | 175-190 | 13.640 |
| IHF | 219-231 | 13.563 |
| MelR | 89-106 | 12.835 |
| Fis | 178-198 | 12.756 |
| UxuR | 236-253 | 12.509 |
| PhoP | 277-293 | 12.316 |
| ArgP | 234-246 | 11.939 |
| XylR | 2-19 | 11.921 |
| TrpR | 329-346 | 11.575 |
| TyrR | 88-109 | 11.358 |
| PspF | 120-136 | 11.323 |
| Lrp | 7-18 | 11.170 |
| CpxR | 312-326 | 11.058 |
| NorR | 378-394 | 11.031 |
| GlpR | 329-348 | 10.783 |
| MarA | 337-357 | 10.620 |
| IdnR | 221-236 | 10.476 |
| Rob | 368-388 | 10.380 |
| ModE | 94-120 | 9.834 |
| AraC | 123-140 | 9.027 |
| GntR | 263-282 | 8.984 |
| RhaS | 331-347 | 8.962 |
| LexA | 71-90 | 8.673 |
| Ada | 207-234 | 8.541 |
| DnaA | 233-241 | 8.160 |
| NarL | 233-239 | 8.131 |
| TorR | 174-183 | 7.736 |
| FadR | 37-53 | 7.404 |
| PurR | 333-348 | 7.193 |
| LacI | 209-229 | 7.023 |
| NarP | 132-138 | 6.657 |
| FruR | 269-286 | 6.296 |
| FhlA | 205-244 | 6.074 |
| MetJ | 136-143 | 5.787 |