| TF name | Position | PWM scan score |
| ArcA | 339-399 | 24.779 |
| H-NS | 356-370 | 19.271 |
| CRP | 24-45 | 18.114 |
| OmpR | 353-372 | 17.632 |
| GadE | 357-376 | 15.743 |
| DcuR | 307-361 | 15.348 |
| Nac | 354-368 | 15.105 |
| CysB | 349-390 | 15.080 |
| DeoR | 28-43 | 14.911 |
| MelR | 38-55 | 14.547 |
| ArgR | 10-25 | 13.659 |
| MetR | 343-366 | 13.656 |
| NagC | 356-378 | 13.407 |
| DnaA | 26-34 | 13.399 |
| OxyR | 340-384 | 12.813 |
| FNR | 7-28 | 12.522 |
| IHF | 317-329 | 12.479 |
| Ada | 324-351 | 12.459 |
| RcsB | 345-358 | 12.235 |
| UlaR | 312-331 | 11.912 |
| Mlc | 350-372 | 11.905 |
| Lrp | 355-366 | 11.734 |
| Rob | 361-381 | 11.687 |
| UxuR | 345-362 | 11.522 |
| CytR | 291-330 | 11.512 |
| Fis | 16-36 | 11.207 |
| CpxR | 350-364 | 11.193 |
| NorR | 6-22 | 11.031 |
| Fur | 339-353 | 10.701 |
| ArgP | 357-369 | 10.665 |
| AraC | 192-209 | 10.323 |
| AgaR | 351-374 | 10.300 |
| PhoB | 359-378 | 10.144 |
| ModE | 345-371 | 9.898 |
| GcvA | 1-29 | 9.778 |
| NarP | 163-169 | 9.746 |
| MarA | 346-366 | 9.601 |
| SoxS | 29-46 | 9.297 |
| PhoP | 90-106 | 9.150 |
| LexA | 6-25 | 9.083 |
| PspF | 345-361 | 9.003 |
| NtrC | 259-275 | 8.701 |
| NarL | 347-353 | 8.685 |
| MetJ | 82-89 | 8.499 |
| TorR | 301-310 | 8.165 |
| GlpR | 57-76 | 7.767 |
| IdnR | 351-366 | 7.535 |
| TrpR | 352-369 | 7.493 |
| TyrR | 348-369 | 7.455 |
| XylR | 352-369 | 7.431 |
| GntR | 353-372 | 7.339 |
| LacI | 340-360 | 7.140 |
| FruR | 24-41 | 6.880 |
| FhlA | 7-46 | 6.467 |
| PurR | 242-257 | 6.254 |
| GalS | 28-43 | 5.994 |
| GalR | 28-43 | 5.994 |
| FadR | 365-381 | 5.809 |
| MalT | 250-259 | 5.061 |