| TF name | Position | PWM scan score |
| ArcA | 214-274 | 34.475 |
| CysB | 187-228 | 21.571 |
| OxyR | 227-271 | 17.597 |
| NagC | 235-257 | 17.509 |
| GcvA | 247-275 | 17.457 |
| MetR | 331-354 | 16.450 |
| CytR | 214-253 | 16.217 |
| GadE | 352-371 | 16.177 |
| FNR | 231-252 | 15.751 |
| RcsB | 153-166 | 15.416 |
| PhoB | 214-233 | 15.079 |
| DcuR | 208-262 | 14.741 |
| OmpR | 34-53 | 14.680 |
| Fur | 149-163 | 14.601 |
| H-NS | 274-288 | 14.512 |
| SoxS | 292-309 | 14.473 |
| Nac | 237-251 | 14.286 |
| AgaR | 228-251 | 14.274 |
| ArgR | 300-315 | 14.265 |
| Mlc | 343-365 | 13.873 |
| NorR | 4-20 | 13.861 |
| DeoR | 201-216 | 13.828 |
| IHF | 218-230 | 13.661 |
| TrpR | 355-372 | 13.518 |
| MarA | 109-129 | 12.904 |
| UxuR | 215-232 | 12.781 |
| ArgP | 260-272 | 12.486 |
| XylR | 114-131 | 12.262 |
| CRP | 257-278 | 12.194 |
| Fis | 280-300 | 12.191 |
| ModE | 241-267 | 12.004 |
| PhoP | 285-301 | 11.734 |
| MelR | 226-243 | 11.701 |
| RhaS | 357-373 | 11.648 |
| PspF | 146-162 | 11.323 |
| Rob | 278-298 | 11.051 |
| TyrR | 114-135 | 10.979 |
| Lrp | 223-234 | 10.848 |
| UlaR | 339-358 | 10.527 |
| GlpR | 355-374 | 10.303 |
| MetJ | 95-102 | 10.171 |
| CpxR | 230-244 | 9.975 |
| AraC | 218-235 | 9.654 |
| IdnR | 247-262 | 9.237 |
| LexA | 378-397 | 9.083 |
| GntR | 289-308 | 8.984 |
| NarL | 355-361 | 8.131 |
| FhlA | 130-169 | 7.783 |
| TorR | 200-209 | 7.736 |
| NtrC | 45-61 | 7.202 |
| LacI | 235-255 | 7.023 |
| FruR | 112-129 | 6.984 |
| MalT | 9-18 | 6.776 |
| NarP | 158-164 | 6.657 |
| DnaA | 378-386 | 6.502 |
| Ada | 169-196 | 6.315 |
| FadR | 263-279 | 6.292 |
| PurR | 359-374 | 5.414 |