| TF name | Position | PWM scan score |
| ArcA | 284-344 | 32.268 |
| CysB | 120-161 | 28.883 |
| OmpR | 123-142 | 22.166 |
| OxyR | 241-285 | 21.227 |
| DcuR | 274-328 | 21.093 |
| CytR | 200-239 | 20.643 |
| Fur | 131-145 | 20.073 |
| Ada | 186-213 | 19.258 |
| GadE | 62-81 | 18.804 |
| H-NS | 135-149 | 18.110 |
| FNR | 131-152 | 17.893 |
| Mlc | 194-216 | 16.652 |
| ArgP | 145-157 | 15.672 |
| Fis | 127-147 | 15.071 |
| CRP | 128-149 | 14.983 |
| NagC | 296-318 | 14.974 |
| IHF | 35-47 | 14.941 |
| AgaR | 28-51 | 14.640 |
| PhoP | 132-148 | 14.552 |
| TyrR | 121-142 | 14.540 |
| Rob | 122-142 | 14.504 |
| CpxR | 198-212 | 14.372 |
| GcvA | 57-85 | 14.304 |
| Nac | 191-205 | 14.112 |
| UlaR | 35-54 | 13.972 |
| SoxS | 118-135 | 13.625 |
| PhoB | 368-387 | 13.586 |
| ArgR | 303-318 | 13.404 |
| ModE | 357-383 | 13.365 |
| GntR | 222-241 | 12.920 |
| RcsB | 201-214 | 12.857 |
| DeoR | 207-222 | 12.501 |
| Lrp | 324-335 | 12.261 |
| NorR | 362-378 | 11.823 |
| PspF | 134-150 | 11.790 |
| UxuR | 373-390 | 11.717 |
| MetR | 45-68 | 11.560 |
| LexA | 220-239 | 10.881 |
| MelR | 54-71 | 9.841 |
| NarL | 129-135 | 9.580 |
| MarA | 214-234 | 9.520 |
| TrpR | 221-238 | 9.085 |
| TorR | 66-75 | 9.082 |
| XylR | 366-383 | 9.058 |
| GlpR | 203-222 | 8.549 |
| PurR | 79-94 | 8.497 |
| AraC | 24-41 | 8.415 |
| MalT | 102-111 | 8.390 |
| NarP | 380-386 | 8.306 |
| IdnR | 194-209 | 8.035 |
| DnaA | 65-73 | 7.974 |
| LacI | 264-284 | 7.828 |
| MetJ | 199-206 | 7.710 |
| FruR | 32-49 | 7.636 |
| GalR | 132-147 | 6.146 |
| GalS | 132-147 | 6.146 |
| FhlA | 198-237 | 5.744 |
| CaiF | 185-229 | 5.202 |