| TF name | Position | PWM scan score |
| ArcA | 114-174 | 33.012 |
| OmpR | 147-166 | 22.878 |
| TyrR | 145-166 | 21.047 |
| CysB | 143-184 | 19.443 |
| Mlc | 240-262 | 18.673 |
| DcuR | 124-178 | 17.957 |
| GadE | 132-151 | 17.293 |
| NagC | 282-304 | 16.951 |
| PhoB | 72-91 | 16.929 |
| CRP | 25-46 | 16.453 |
| CytR | 226-265 | 15.743 |
| GcvA | 144-172 | 15.335 |
| FNR | 286-307 | 15.325 |
| PhoP | 186-202 | 15.314 |
| H-NS | 74-88 | 15.299 |
| OxyR | 71-115 | 15.076 |
| DeoR | 112-127 | 14.655 |
| Fur | 75-89 | 14.615 |
| Fis | 75-95 | 14.388 |
| AgaR | 74-97 | 14.192 |
| CpxR | 147-161 | 13.839 |
| AraC | 76-93 | 13.818 |
| Nac | 191-205 | 13.383 |
| ArgR | 78-93 | 13.203 |
| MetR | 287-310 | 12.759 |
| IHF | 76-88 | 12.716 |
| Ada | 135-162 | 12.449 |
| UlaR | 52-71 | 12.067 |
| XylR | 146-163 | 11.923 |
| ModE | 136-162 | 11.779 |
| FhlA | 334-373 | 11.488 |
| GlpR | 66-85 | 11.321 |
| RcsB | 82-95 | 11.279 |
| Lrp | 127-138 | 11.048 |
| SoxS | 4-21 | 10.384 |
| NarL | 95-101 | 10.130 |
| GntR | 244-263 | 9.914 |
| MarA | 231-251 | 9.909 |
| Rob | 145-165 | 9.901 |
| LexA | 223-242 | 9.806 |
| NarP | 304-310 | 9.543 |
| ArgP | 2-14 | 9.493 |
| IdnR | 140-155 | 9.143 |
| TorR | 288-297 | 9.030 |
| MelR | 81-98 | 8.804 |
| PspF | 42-58 | 8.214 |
| FruR | 185-202 | 7.609 |
| CaiF | 342-386 | 7.530 |
| LacI | 26-46 | 6.811 |
| DnaA | 175-183 | 6.749 |
| GalS | 20-35 | 6.409 |
| GalR | 20-35 | 6.409 |
| MetJ | 253-260 | 6.028 |
| TrpR | 52-69 | 5.614 |
| NorR | 13-29 | 5.313 |
| UxuR | 224-241 | 5.304 |
| RhaS | 94-110 | 5.216 |