| TF name | Position | PWM scan score |
| ArcA | 115-175 | 35.403 |
| AgaR | 344-367 | 26.737 |
| DcuR | 159-213 | 24.373 |
| CysB | 358-399 | 24.098 |
| GcvA | 39-67 | 19.953 |
| OxyR | 28-72 | 19.415 |
| Mlc | 356-378 | 19.314 |
| NagC | 317-339 | 18.988 |
| CRP | 308-329 | 18.906 |
| FNR | 347-368 | 17.917 |
| OmpR | 53-72 | 17.901 |
| CytR | 182-221 | 17.684 |
| UlaR | 304-323 | 17.640 |
| H-NS | 45-59 | 17.610 |
| TyrR | 308-329 | 16.912 |
| ArgR | 192-207 | 16.385 |
| PhoB | 161-180 | 16.138 |
| GadE | 65-84 | 16.010 |
| Fur | 118-132 | 15.765 |
| PhoP | 260-276 | 15.254 |
| Nac | 171-185 | 14.947 |
| IHF | 83-95 | 14.818 |
| DeoR | 50-65 | 14.287 |
| FruR | 138-155 | 14.121 |
| XylR | 345-362 | 13.892 |
| PspF | 54-70 | 13.670 |
| RcsB | 125-138 | 13.550 |
| Lrp | 371-382 | 13.538 |
| GlpR | 179-198 | 13.483 |
| Fis | 47-67 | 13.324 |
| SoxS | 249-266 | 13.298 |
| NorR | 86-102 | 13.267 |
| FadR | 71-87 | 12.696 |
| MelR | 119-136 | 12.355 |
| MarA | 56-76 | 12.340 |
| AraC | 366-383 | 11.432 |
| ModE | 33-59 | 11.393 |
| ArgP | 144-156 | 11.287 |
| Rob | 27-47 | 10.507 |
| TorR | 262-271 | 10.457 |
| Ada | 157-184 | 10.317 |
| IdnR | 134-149 | 10.026 |
| LacI | 347-367 | 9.850 |
| CpxR | 310-324 | 9.755 |
| UxuR | 35-52 | 9.662 |
| LexA | 44-63 | 9.471 |
| MetJ | 281-288 | 9.451 |
| GntR | 311-330 | 9.449 |
| NarL | 227-233 | 9.333 |
| DnaA | 147-155 | 9.041 |
| MalT | 270-279 | 8.602 |
| MetR | 2-25 | 8.087 |
| PurR | 60-75 | 7.880 |
| CaiF | 175-219 | 7.610 |
| GalR | 7-22 | 7.493 |
| GalS | 7-22 | 7.493 |
| FhlA | 168-207 | 7.002 |
| NarP | 203-209 | 6.591 |
| NtrC | 60-76 | 6.541 |