| TF name | Position | PWM scan score |
| ArcA | 320-380 | 35.094 |
| CysB | 341-382 | 22.574 |
| AgaR | 366-389 | 20.072 |
| GcvA | 320-348 | 19.953 |
| OxyR | 309-353 | 19.415 |
| OmpR | 334-353 | 17.901 |
| CytR | 323-362 | 17.641 |
| H-NS | 326-340 | 17.610 |
| Mlc | 328-350 | 16.080 |
| GadE | 346-365 | 16.010 |
| FNR | 331-352 | 15.936 |
| UlaR | 370-389 | 15.315 |
| CRP | 356-377 | 15.303 |
| NagC | 329-351 | 15.077 |
| IHF | 364-376 | 14.818 |
| DeoR | 331-346 | 14.287 |
| PspF | 335-351 | 13.670 |
| Fis | 328-348 | 13.324 |
| NorR | 367-383 | 13.267 |
| PhoB | 346-365 | 12.938 |
| GlpR | 191-210 | 12.734 |
| RcsB | 365-378 | 12.706 |
| FadR | 352-368 | 12.696 |
| MarA | 337-357 | 12.340 |
| TyrR | 82-103 | 12.215 |
| XylR | 320-337 | 11.921 |
| ModE | 75-101 | 11.823 |
| MetR | 141-164 | 11.245 |
| Lrp | 343-354 | 10.678 |
| Fur | 151-165 | 10.675 |
| Rob | 308-328 | 10.507 |
| Nac | 326-340 | 10.504 |
| GalS | 105-120 | 10.267 |
| GalR | 105-120 | 10.267 |
| ArgP | 376-388 | 10.037 |
| SoxS | 216-233 | 9.820 |
| DnaA | 137-145 | 9.795 |
| ArgR | 360-375 | 9.754 |
| MetJ | 60-67 | 9.735 |
| UxuR | 122-139 | 9.732 |
| IdnR | 286-301 | 9.509 |
| LexA | 325-344 | 9.471 |
| DcuR | 336-390 | 9.322 |
| PhoP | 340-356 | 8.888 |
| Ada | 68-95 | 8.729 |
| AraC | 350-367 | 8.641 |
| NarL | 12-18 | 8.154 |
| CpxR | 26-40 | 8.030 |
| PurR | 341-356 | 7.880 |
| NarP | 233-239 | 7.828 |
| MelR | 314-331 | 6.900 |
| TorR | 316-325 | 6.598 |
| NtrC | 341-357 | 6.541 |
| LacI | 209-229 | 6.143 |
| FhlA | 215-254 | 6.040 |
| FruR | 290-307 | 5.783 |
| TrpR | 141-158 | 5.188 |