| TF name | Position | PWM scan score |
| ArcA | 122-182 | 32.750 |
| CysB | 193-234 | 24.849 |
| Rob | 162-182 | 21.354 |
| CytR | 196-235 | 20.533 |
| AgaR | 157-180 | 19.703 |
| NagC | 20-42 | 19.586 |
| OmpR | 217-236 | 19.119 |
| Mlc | 149-171 | 18.956 |
| OxyR | 141-185 | 18.569 |
| GcvA | 11-39 | 17.663 |
| GadE | 164-183 | 16.495 |
| IHF | 159-171 | 15.677 |
| FNR | 150-171 | 15.676 |
| UlaR | 7-26 | 15.498 |
| Fur | 210-224 | 15.493 |
| PhoP | 35-51 | 14.370 |
| H-NS | 164-178 | 14.220 |
| CRP | 110-131 | 14.119 |
| Ada | 146-173 | 13.970 |
| DeoR | 151-166 | 13.957 |
| Fis | 148-168 | 13.646 |
| GlpR | 220-239 | 13.354 |
| TyrR | 147-168 | 13.292 |
| PhoB | 61-80 | 13.088 |
| ArgP | 59-71 | 12.975 |
| RcsB | 217-230 | 12.914 |
| SoxS | 204-221 | 12.503 |
| MarA | 95-115 | 12.129 |
| CpxR | 162-176 | 12.071 |
| ArgR | 162-177 | 11.306 |
| GntR | 162-181 | 11.157 |
| ModE | 116-142 | 10.953 |
| FruR | 324-341 | 10.792 |
| Lrp | 164-175 | 10.694 |
| AraC | 140-157 | 10.614 |
| DcuR | 113-167 | 10.443 |
| XylR | 11-28 | 10.204 |
| MelR | 108-125 | 9.816 |
| FhlA | 145-184 | 9.587 |
| PurR | 172-187 | 9.018 |
| PspF | 178-194 | 8.936 |
| Nac | 166-180 | 8.904 |
| MetR | 2-25 | 8.686 |
| LacI | 29-49 | 8.621 |
| IdnR | 141-156 | 8.223 |
| UxuR | 178-195 | 8.121 |
| TorR | 378-387 | 7.965 |
| NorR | 70-86 | 7.915 |
| NarL | 72-78 | 7.703 |
| MalT | 133-142 | 7.150 |
| DnaA | 151-159 | 6.265 |
| NtrC | 255-271 | 6.153 |
| LexA | 358-377 | 5.498 |
| NarP | 142-148 | 5.270 |
| FadR | 59-75 | 5.204 |