| TF name | Position | PWM scan score |
| ArcA | 328-388 | 24.969 |
| MarA | 309-329 | 17.429 |
| AgaR | 127-150 | 16.386 |
| NagC | 335-357 | 16.314 |
| Nac | 12-26 | 15.793 |
| GadE | 352-371 | 15.699 |
| CRP | 256-277 | 14.984 |
| PhoP | 52-68 | 14.836 |
| OxyR | 315-359 | 14.549 |
| CytR | 219-258 | 14.524 |
| Fis | 338-358 | 14.482 |
| ModE | 197-223 | 14.122 |
| CysB | 338-379 | 14.096 |
| H-NS | 67-81 | 13.790 |
| Ada | 55-82 | 13.557 |
| OmpR | 101-120 | 13.508 |
| NorR | 338-354 | 13.334 |
| UlaR | 135-154 | 13.002 |
| DcuR | 322-376 | 12.934 |
| XylR | 283-300 | 12.713 |
| LexA | 198-217 | 12.695 |
| FNR | 345-366 | 12.425 |
| GcvA | 347-375 | 12.231 |
| PhoB | 10-29 | 11.552 |
| SoxS | 205-222 | 11.363 |
| IHF | 14-26 | 11.306 |
| RcsB | 20-33 | 11.279 |
| ArgR | 64-79 | 10.785 |
| Lrp | 134-145 | 10.737 |
| MelR | 275-292 | 10.561 |
| FadR | 322-338 | 10.453 |
| DeoR | 312-327 | 10.313 |
| MetR | 120-143 | 10.162 |
| AraC | 212-229 | 10.098 |
| Fur | 128-142 | 10.081 |
| TorR | 13-22 | 9.785 |
| Mlc | 70-92 | 9.447 |
| UxuR | 338-355 | 9.145 |
| GlpR | 254-273 | 8.706 |
| DnaA | 53-61 | 8.492 |
| PspF | 242-258 | 8.385 |
| Rob | 348-368 | 8.340 |
| TyrR | 62-83 | 8.232 |
| CpxR | 65-79 | 8.023 |
| NarP | 197-203 | 7.965 |
| FhlA | 299-338 | 7.781 |
| GntR | 365-384 | 7.610 |
| NarL | 347-353 | 7.483 |
| MetJ | 299-306 | 7.328 |
| CueR | 365-383 | 7.249 |
| ArgP | 15-27 | 7.093 |
| IdnR | 204-219 | 6.017 |