| TF name | Position | PWM scan score |
| ArcA | 19-79 | 28.867 |
| DcuR | 295-349 | 21.331 |
| OmpR | 19-38 | 20.090 |
| UlaR | 25-44 | 19.990 |
| CysB | 332-373 | 19.322 |
| H-NS | 21-35 | 19.257 |
| ModE | 91-117 | 18.901 |
| TyrR | 138-159 | 18.549 |
| Mlc | 36-58 | 18.260 |
| CRP | 32-53 | 16.252 |
| CytR | 20-59 | 15.577 |
| AgaR | 32-55 | 15.529 |
| UxuR | 23-40 | 15.464 |
| FNR | 163-184 | 15.461 |
| GadE | 176-195 | 15.218 |
| IHF | 172-184 | 14.776 |
| MetR | 345-368 | 14.426 |
| PhoB | 22-41 | 14.421 |
| GcvA | 15-43 | 14.103 |
| Fis | 23-43 | 13.956 |
| AraC | 140-157 | 13.570 |
| OxyR | 18-62 | 13.411 |
| XylR | 138-155 | 13.156 |
| MarA | 289-309 | 13.012 |
| Lrp | 307-318 | 12.976 |
| NagC | 217-239 | 12.835 |
| ArgR | 18-33 | 12.784 |
| SoxS | 291-308 | 12.677 |
| Rob | 295-315 | 12.664 |
| PhoP | 167-183 | 12.586 |
| CpxR | 212-226 | 12.373 |
| DeoR | 39-54 | 12.178 |
| MelR | 227-244 | 11.732 |
| NorR | 141-157 | 11.484 |
| Fur | 273-287 | 11.325 |
| IdnR | 158-173 | 10.936 |
| TorR | 93-102 | 10.851 |
| ArgP | 233-245 | 10.636 |
| Nac | 98-112 | 10.512 |
| FadR | 89-105 | 10.373 |
| DnaA | 179-187 | 10.092 |
| GlpR | 173-192 | 10.065 |
| NtrC | 16-32 | 10.019 |
| GalS | 309-324 | 8.987 |
| GalR | 309-324 | 8.987 |
| NarP | 152-158 | 8.594 |
| RcsB | 363-376 | 8.538 |
| LexA | 175-194 | 8.243 |
| GntR | 32-51 | 8.185 |
| NarL | 229-235 | 8.154 |
| PspF | 19-35 | 7.677 |
| Ada | 17-44 | 7.470 |
| MetJ | 169-176 | 7.082 |
| PurR | 335-350 | 6.424 |
| CueR | 129-147 | 6.332 |
| FruR | 237-254 | 6.166 |
| FhlA | 324-363 | 5.937 |