| TF name | Position | PWM scan score |
| ArcA | 93-153 | 27.835 |
| CysB | 110-151 | 19.195 |
| Mlc | 122-144 | 18.825 |
| FNR | 354-375 | 16.996 |
| PhoP | 125-141 | 16.981 |
| AgaR | 211-234 | 16.960 |
| CytR | 356-395 | 16.032 |
| Fur | 114-128 | 15.064 |
| OxyR | 76-120 | 15.039 |
| TyrR | 152-173 | 14.712 |
| GcvA | 122-150 | 14.556 |
| PhoB | 127-146 | 14.451 |
| MelR | 1-18 | 14.115 |
| GalS | 332-347 | 14.096 |
| GalR | 332-347 | 14.096 |
| Fis | 43-63 | 13.896 |
| GntR | 25-44 | 13.819 |
| H-NS | 367-381 | 13.773 |
| GlpR | 353-372 | 13.757 |
| PspF | 117-133 | 13.744 |
| NorR | 163-179 | 13.700 |
| TorR | 92-101 | 13.664 |
| MetR | 222-245 | 13.560 |
| NtrC | 134-150 | 13.344 |
| ModE | 357-383 | 13.250 |
| OmpR | 355-374 | 12.629 |
| PurR | 332-347 | 12.594 |
| FruR | 227-244 | 12.568 |
| AraC | 150-167 | 12.163 |
| MetJ | 59-66 | 12.104 |
| CRP | 351-372 | 12.098 |
| IHF | 98-110 | 11.960 |
| Rob | 101-121 | 11.828 |
| CpxR | 243-257 | 11.596 |
| MarA | 38-58 | 11.410 |
| SoxS | 381-398 | 11.177 |
| Lrp | 155-166 | 10.972 |
| FhlA | 133-172 | 10.837 |
| NagC | 217-239 | 10.723 |
| XylR | 119-136 | 10.432 |
| Nac | 343-357 | 10.384 |
| RcsB | 27-40 | 10.306 |
| DnaA | 160-168 | 10.244 |
| NarL | 103-109 | 10.130 |
| Ada | 146-173 | 9.816 |
| ArgP | 157-169 | 9.793 |
| IdnR | 127-142 | 9.237 |
| GadE | 355-374 | 9.236 |
| FadR | 363-379 | 8.954 |
| DcuR | 112-166 | 8.731 |
| UxuR | 357-374 | 8.497 |
| ArgR | 49-64 | 7.962 |
| UlaR | 117-136 | 7.952 |
| RhaS | 13-29 | 6.626 |
| TrpR | 222-239 | 6.472 |
| DeoR | 361-376 | 6.160 |
| NarP | 351-357 | 5.708 |
| LexA | 274-293 | 5.626 |
| LacI | 98-118 | 5.401 |