| TF name | Position | PWM scan score |
| ArcA | 285-345 | 21.232 |
| PhoP | 181-197 | 18.429 |
| CytR | 185-224 | 17.439 |
| UlaR | 119-138 | 16.812 |
| OmpR | 12-31 | 16.727 |
| GcvA | 323-351 | 16.105 |
| MelR | 60-77 | 14.304 |
| NorR | 211-227 | 13.250 |
| ModE | 285-311 | 13.204 |
| MarA | 6-26 | 13.152 |
| RcsB | 153-166 | 12.983 |
| IHF | 183-195 | 12.967 |
| OxyR | 315-359 | 12.695 |
| H-NS | 185-199 | 12.564 |
| AraC | 204-221 | 12.559 |
| Nac | 277-291 | 12.543 |
| GadE | 134-153 | 12.431 |
| CRP | 147-168 | 12.389 |
| Rob | 285-305 | 12.310 |
| FruR | 101-118 | 12.264 |
| Ada | 258-285 | 12.207 |
| Fis | 9-29 | 11.661 |
| CpxR | 293-307 | 11.401 |
| MetR | 313-336 | 11.399 |
| FNR | 285-306 | 11.126 |
| GlpR | 326-345 | 10.815 |
| CysB | 114-155 | 10.811 |
| PspF | 198-214 | 10.789 |
| IdnR | 304-319 | 10.392 |
| TyrR | 305-326 | 10.027 |
| Lrp | 35-46 | 9.490 |
| ArgP | 145-157 | 9.490 |
| PhoB | 17-36 | 9.398 |
| UxuR | 188-205 | 9.222 |
| NarL | 15-21 | 8.951 |
| XylR | 149-166 | 8.820 |
| SoxS | 14-31 | 8.706 |
| PurR | 183-198 | 8.635 |
| TorR | 353-362 | 8.454 |
| LacI | 212-232 | 8.436 |
| Fur | 122-136 | 8.312 |
| GalR | 184-199 | 8.126 |
| GalS | 184-199 | 8.126 |
| DeoR | 9-24 | 8.106 |
| DcuR | 278-332 | 7.992 |
| DnaA | 352-360 | 7.974 |
| NarP | 159-165 | 7.806 |
| ArgR | 143-158 | 7.767 |
| AgaR | 103-126 | 7.742 |
| NtrC | 383-399 | 7.574 |
| RhaS | 240-256 | 7.236 |
| FadR | 58-74 | 7.084 |
| Mlc | 278-300 | 7.024 |
| GntR | 108-127 | 6.952 |
| NagC | 308-330 | 6.848 |
| MetJ | 273-280 | 6.781 |
| MalT | 271-280 | 5.772 |