| TF name | Position | PWM scan score |
| ArcA | 233-293 | 34.242 |
| CysB | 166-207 | 27.893 |
| DcuR | 176-230 | 26.203 |
| OxyR | 167-211 | 23.327 |
| GcvA | 190-218 | 22.501 |
| AgaR | 220-243 | 21.627 |
| OmpR | 366-385 | 19.804 |
| PhoP | 156-172 | 19.116 |
| CytR | 347-386 | 17.941 |
| TyrR | 312-333 | 17.196 |
| FNR | 344-365 | 16.878 |
| RcsB | 296-309 | 15.697 |
| CpxR | 267-281 | 15.543 |
| NagC | 341-363 | 15.384 |
| MarA | 286-306 | 15.170 |
| GadE | 161-180 | 14.984 |
| NorR | 232-248 | 14.761 |
| H-NS | 377-391 | 13.961 |
| MetR | 309-332 | 13.867 |
| DeoR | 166-181 | 13.224 |
| ArgR | 201-216 | 13.134 |
| Rob | 290-310 | 13.129 |
| SoxS | 160-177 | 13.095 |
| IHF | 17-29 | 12.696 |
| Fur | 11-25 | 12.643 |
| Fis | 29-49 | 12.519 |
| CRP | 262-283 | 12.359 |
| Mlc | 361-383 | 12.296 |
| Nac | 180-194 | 12.262 |
| Ada | 318-345 | 12.194 |
| ArgP | 197-209 | 12.092 |
| ModE | 196-222 | 11.973 |
| UlaR | 223-242 | 11.934 |
| LexA | 30-49 | 11.784 |
| PhoB | 163-182 | 11.277 |
| Lrp | 195-206 | 11.194 |
| IdnR | 216-231 | 10.570 |
| GlpR | 367-386 | 10.134 |
| NarL | 183-189 | 10.130 |
| FruR | 299-316 | 10.025 |
| XylR | 314-331 | 9.874 |
| AraC | 199-216 | 9.295 |
| PspF | 357-373 | 9.265 |
| GalR | 99-114 | 9.151 |
| GalS | 99-114 | 9.151 |
| LacI | 246-266 | 8.876 |
| UxuR | 252-269 | 8.601 |
| MalT | 218-227 | 8.099 |
| GntR | 318-337 | 7.958 |
| NarP | 302-308 | 7.806 |
| MetJ | 366-373 | 7.710 |
| DnaA | 27-35 | 7.532 |
| NtrC | 20-36 | 7.023 |
| MelR | 102-119 | 6.989 |
| FadR | 206-222 | 6.687 |
| TrpR | 161-178 | 6.436 |
| TorR | 165-174 | 6.396 |