| TF name | Position | PWM scan score |
| ArcA | 194-254 | 23.282 |
| GcvA | 335-363 | 21.260 |
| DcuR | 78-132 | 20.028 |
| CysB | 192-233 | 18.092 |
| MetR | 157-180 | 17.664 |
| AgaR | 298-321 | 17.304 |
| CytR | 62-101 | 16.079 |
| PhoP | 19-35 | 14.877 |
| NagC | 211-233 | 14.723 |
| IHF | 25-37 | 14.438 |
| XylR | 248-265 | 14.288 |
| FNR | 353-374 | 13.649 |
| OmpR | 338-357 | 13.509 |
| ModE | 242-268 | 13.443 |
| Mlc | 235-257 | 12.969 |
| MarA | 284-304 | 12.774 |
| CRP | 26-47 | 12.591 |
| Fis | 333-353 | 12.437 |
| Ada | 247-274 | 12.368 |
| H-NS | 219-233 | 12.287 |
| CpxR | 335-349 | 12.141 |
| Rob | 336-356 | 11.539 |
| GadE | 191-210 | 11.455 |
| PurR | 334-349 | 11.294 |
| MetJ | 221-228 | 11.100 |
| TyrR | 249-270 | 10.428 |
| Lrp | 165-176 | 10.416 |
| Nac | 151-165 | 10.398 |
| NorR | 252-268 | 10.309 |
| ArgR | 192-207 | 10.235 |
| GlpR | 352-371 | 10.219 |
| UlaR | 220-239 | 10.133 |
| GntR | 336-355 | 9.784 |
| PhoB | 353-372 | 9.594 |
| NarP | 132-138 | 9.455 |
| OxyR | 219-263 | 9.243 |
| FhlA | 200-239 | 9.237 |
| TorR | 92-101 | 9.091 |
| GalR | 30-45 | 9.005 |
| GalS | 30-45 | 9.005 |
| LacI | 353-373 | 8.977 |
| PspF | 104-120 | 8.748 |
| ArgP | 233-245 | 8.433 |
| DnaA | 130-138 | 8.280 |
| SoxS | 48-65 | 8.256 |
| IdnR | 145-160 | 8.233 |
| TrpR | 219-236 | 7.845 |
| FadR | 227-243 | 7.787 |
| RcsB | 248-261 | 7.576 |
| MalT | 117-126 | 7.217 |
| AraC | 192-209 | 7.176 |
| UxuR | 34-51 | 7.164 |
| NarL | 289-295 | 7.032 |
| FruR | 100-117 | 6.642 |
| DeoR | 260-275 | 6.515 |
| Fur | 228-242 | 6.440 |
| RhaS | 90-106 | 6.316 |
| LexA | 316-335 | 5.130 |