| TF name | Position | PWM scan score |
| PhoP | 203-219 | 16.921 |
| ArgR | 363-378 | 16.529 |
| ArcA | 65-125 | 16.249 |
| PhoB | 289-308 | 15.639 |
| GlpR | 106-125 | 15.585 |
| GntR | 273-292 | 15.430 |
| H-NS | 365-379 | 14.559 |
| FNR | 203-224 | 14.440 |
| Fur | 149-163 | 14.312 |
| PspF | 146-162 | 14.261 |
| AgaR | 280-303 | 14.199 |
| CpxR | 204-218 | 13.838 |
| DeoR | 204-219 | 13.762 |
| NorR | 247-263 | 13.703 |
| XylR | 106-123 | 13.211 |
| Fis | 24-44 | 12.839 |
| CRP | 296-317 | 12.314 |
| MelR | 22-39 | 12.284 |
| SoxS | 29-46 | 12.167 |
| Mlc | 295-317 | 12.126 |
| IHF | 149-161 | 11.919 |
| UlaR | 145-164 | 11.746 |
| NagC | 107-129 | 11.713 |
| TyrR | 98-119 | 11.567 |
| Lrp | 203-214 | 11.344 |
| OmpR | 368-387 | 11.332 |
| CysB | 276-317 | 11.256 |
| RcsB | 366-379 | 10.933 |
| ArgP | 370-382 | 10.920 |
| GadE | 206-225 | 10.910 |
| CytR | 278-317 | 10.404 |
| MarA | 201-221 | 10.395 |
| Ada | 152-179 | 10.394 |
| NarL | 151-157 | 10.377 |
| OxyR | 282-326 | 10.304 |
| Nac | 23-37 | 10.301 |
| NtrC | 257-273 | 10.256 |
| FruR | 284-301 | 10.207 |
| ModE | 343-369 | 10.119 |
| Rob | 363-383 | 10.034 |
| NarP | 50-56 | 9.680 |
| TorR | 201-210 | 9.476 |
| RhaS | 276-292 | 9.168 |
| AraC | 254-271 | 8.755 |
| GcvA | 146-174 | 8.431 |
| DnaA | 109-117 | 7.425 |
| GalR | 45-60 | 6.674 |
| GalS | 45-60 | 6.674 |
| LexA | 303-322 | 6.471 |
| LacI | 3-23 | 6.304 |
| UxuR | 21-38 | 6.271 |
| MalT | 47-56 | 5.690 |
| MetR | 74-97 | 5.471 |
| FhlA | 73-112 | 5.104 |