| TF name | Position | PWM scan score |
| Fis | 79-99 | 19.042 |
| UxuR | 173-190 | 14.302 |
| CpxR | 383-397 | 13.849 |
| FNR | 167-188 | 13.581 |
| ArgR | 85-100 | 13.381 |
| MarA | 194-214 | 13.227 |
| PhoB | 378-397 | 13.171 |
| OxyR | 146-190 | 12.630 |
| NorR | 274-290 | 12.283 |
| GlpR | 244-263 | 12.091 |
| SoxS | 196-213 | 12.014 |
| H-NS | 78-92 | 11.604 |
| ArcA | 87-147 | 11.111 |
| OmpR | 124-143 | 10.610 |
| NagC | 79-101 | 10.164 |
| IHF | 92-104 | 10.024 |
| Lrp | 160-171 | 9.777 |
| RcsB | 35-48 | 9.720 |
| Fur | 157-171 | 9.553 |
| GadE | 79-98 | 9.312 |
| DeoR | 383-398 | 9.263 |
| Nac | 156-170 | 9.156 |
| NarP | 314-320 | 8.977 |
| CRP | 185-206 | 8.953 |
| AraC | 152-169 | 8.661 |
| PhoP | 130-146 | 8.455 |
| XylR | 128-145 | 8.345 |
| UlaR | 374-393 | 7.763 |
| MalT | 311-320 | 7.691 |
| CysB | 173-214 | 7.428 |
| AgaR | 156-179 | 7.407 |
| NtrC | 83-99 | 7.388 |
| Mlc | 234-256 | 7.282 |
| RhaS | 221-237 | 7.223 |
| ModE | 340-366 | 7.138 |
| GcvA | 88-116 | 7.111 |
| MetR | 175-198 | 7.025 |
| ArgP | 276-288 | 7.003 |
| GalR | 93-108 | 6.919 |
| GalS | 93-108 | 6.919 |
| DnaA | 282-290 | 6.898 |
| CueR | 244-262 | 6.883 |
| TorR | 166-175 | 6.779 |
| PspF | 298-314 | 6.515 |
| TyrR | 178-199 | 6.363 |
| IdnR | 90-105 | 6.101 |
| PurR | 122-137 | 5.939 |
| Rob | 123-143 | 5.639 |
| NarL | 131-137 | 5.091 |